Re: [Freesurfer] mri_anatomical_stats for volume

2014-10-15 Thread Douglas Greve
Can you send your command line with all variables substituted for actual arguments? On 10/15/14 12:26 AM, Vy Dinh wrote: Hi Dr. Greve, I'm encountering a segmentation fault for some subjects when I run the following command: mris_anatomical_stats -l $label -t $hemi.volume -b -f $sublabel

[Freesurfer] mri_anatomical_stats for volume

2014-10-14 Thread Vy Dinh
Dear experts, Can one use mri_anatomical_stats to extract volume information? I have a set of labels that has been mapped to each subject's native space (using mri_label2label; the original labels were extracted from group comparisons using mri_glmfit). I have successfully extracted the

Re: [Freesurfer] mri_anatomical_stats for volume

2014-10-14 Thread Douglas Greve
Use -t hemi.volume (and change the name of the output file:-) doug On 10/14/14 2:30 PM, Vy Dinh wrote: Dear experts, Can one use mri_anatomical_stats to extract volume information? I have a set of labels that has been mapped to each subject's native space (using mri_label2label; the

Re: [Freesurfer] mri_anatomical_stats for volume

2014-10-14 Thread Vy Dinh
Hi Dr. Greve, I'm encountering a segmentation fault for some subjects when I run the following command: mris_anatomical_stats -l $label -t $hemi.volume -b -f $sublabel $sub $hemi *This is the program output for a subject that had the segmentation fault. Strangly, this occurs with the volume