Re: [Freesurfer] mri_surf2surf source and target annot formats

2012-05-25 Thread Douglas Greve
If the source is an annot, then you need to use --sval-annot Is this causing a problem? doug On 5/24/12 6:48 PM, Arno Klein wrote: hello! in mri_surf2surf, does anyone know how to specify the source and target formats if --sval is annot without using --sval-annot, as in --sfmt or --tfmt?

Re: [Freesurfer] mri_surf2surf source and target annot formats

2012-05-25 Thread Satrajit Ghosh
hi doug, we are trying to figure out if for annot we *have to* use sval-annot or if there is a way to do it with sval? cheers, satra On Fri, May 25, 2012 at 9:46 AM, Douglas Greve gr...@nmr.mgh.harvard.eduwrote: If the source is an annot, then you need to use --sval-annot Is this causing

Re: [Freesurfer] mri_surf2surf source and target annot formats

2012-05-25 Thread Douglas N Greve
Currently, yes. If this is a burden for you, I could hack something. There might be other ways such as converting the annot into a segmentation (mris_annotation2label), passing that to surf2surf with --sval (and --mapmethod nnf), then converting the output back to an annotation

Re: [Freesurfer] mri_surf2surf source and target annot formats

2012-05-25 Thread Satrajit Ghosh
hi doug, thanks. we just wanted to verify that annot's are special. no need to hack anything! cheers, satra On Fri, May 25, 2012 at 11:27 AM, Douglas N Greve gr...@nmr.mgh.harvard.edu wrote: Currently, yes. If this is a burden for you, I could hack something. There might be other ways such

[Freesurfer] mri_surf2surf source and target annot formats

2012-05-24 Thread Arno Klein
hello! in mri_surf2surf, does anyone know how to specify the source and target formats if --sval is annot without using --sval-annot, as in --sfmt or --tfmt? cheers, @rno ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu