[Freesurfer] mris_anatomical_stats question

2010-03-19 Thread Bruehl, Hannah
Hi there, I have got 2 questions: 1) is there way to use mris_anatomical_stats to map back the label I have created onto all the subjects in my directory simultaneously? I know there is the --subject option but how do I then specify the directory for each individual subject? 2) I tried to

Re: [Freesurfer] mris_anatomical_stats question

2010-03-19 Thread Sita Kakunoori
Hi Hannah, mris_anatomical_stats computes anatomical properties. To map the label, I think you can use mri_label2label. Sita. On Fri, 19 Mar 2010, Bruehl, Hannah wrote: Hi there, I have got 2 questions: 1) is there way to use mris_anatomical_stats to map back the label I have

Re: [Freesurfer] mris_anatomical_stats question

2010-03-19 Thread Bruce Fischl
Hi Hannah, I'm not sure I know what you mean. Do you have a label on each subject? If so it will look for it in the subjects label directory. As for the second issue, that sounds like a bug. If you want to send us the subject directory we'll fix it. cheers Bruce On Fri, 19 Mar 2010, Bruehl,

[Freesurfer] mris_anatomical_stats question

2007-08-06 Thread Morgan Hough
I am reporting thickness values from subjects native space constrained by mask labels using mris_anatomical_stats. I am currently getting the average of the unsmoothed estimates. I would like to be able to get smoothed values but the usage reports the smoothing option as -nsmooth # where the #