Re: [Freesurfer] mysterious fsgd format error (not the end of line problem)

never mind! It turned out I was forgetting to run a script to move copies of the fixed fsgd files into their final locations. Once I did so the files I posted worked fine. Sorry for the false alarm and thanks for getting back to me! Joe > On Mar 3, 2016, at 12:18, Douglas N Greve

Re: [Freesurfer] mysterious fsgd format error (not the end of line problem)

I cannot replicate the error. What version of FS are you using? What happens if you run mri_glmfit --fsgd RPA-acc.fsgd or mri_glmfit --fsgd RPA-accGT.fsgd On 02/29/2016 09:38 PM, Joseph Dien wrote: > Hi, > I’m having an fsgd error that has totally stumped me. I’m trying to run > the

Re: [Freesurfer] mysterious fsgd format error (not the end of line problem)

No worries, it happens to all of us Bruce > On Mar 2, 2016, at 12:20 AM, Joseph Dien wrote: > > Oops, never mind. User error. I’m too embarrassed to even explain what I > did. :) > > Joe > >> On Feb 29, 2016, at 21:38, Joseph Dien wrote: >> >> Hi, >>

Re: [Freesurfer] mysterious fsgd format error (not the end of line problem)

Oops, never mind. User error. I’m too embarrassed to even explain what I did. :) Joe > On Feb 29, 2016, at 21:38, Joseph Dien wrote: > > Hi, > I’m having an fsgd error that has totally stumped me. I’m trying to run > the following command to compute the second level

[Freesurfer] mysterious fsgd format error (not the end of line problem)

Hi, I’m having an fsgd error that has totally stumped me. I’m trying to run the following command to compute the second level statistics: mri_glmfit --surf fsaverage lh --y ces.nii.gz --wls cesvar.nii.gz --nii.gz --fsgd RPA-accGT.fsgd --glmdir conVinc_normAcc.wls --C main.mtx --C