Re: [Freesurfer] problems with bbregister's output image

2019-01-22 Thread Greve, Douglas N.,Ph.D.
You have effectively applied the registration twice, once when you ran bbregister to get the output and once when you ran tkregister2 with --reg. Try that tkrister2 command with func.nii.gz as the --mov On 1/21/19 6:35 PM, Sam W. wrote: > > External Email - Use Caution > > Hello, > > I

[Freesurfer] problems with bbregister's output image

2019-01-21 Thread Sam W.
External Email - Use Caution Hello, I have registered example_func.nii.gz to the anatomical image using bbregister and then I looked at the registered file with tkregister2. $ bbregister --bold --lta reg.lta --mov example_func.nii.gz --s sub001 --o f-in-anat.nii.gz $ tkregister2