well, we don't run only those steps to generate any volume. Probably your
best bet would be the norm.mgz, although as Doug says it will have a
cerebellum in it, which you can strip with the aseg.mgz
cheers
Bruce
On Sun, 23 Jun 2019, ping cao wrote:
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Thank you for your reply.
I also want to know which file has just finished with 1-3 steps?
Is it nu.mgz? Or nu.mgz?
*T1.mgz* aseg.presurf.mgz
> aparc+aseg.mgz brain.finalsurfs.mgz
It does 1-3. It also labels cerebellum which you could then use to perform #4
On 6/23/2019 7:03 AM, ping cao wrote:
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Dear expert，
Thank you for reading!
I want to do these four pre-processing steps:
1. Re-sampling each MR image to 256*256*256;
2. Using the
External Email - Use Caution
Dear expert，
Thank you for reading!
I want to do these four pre-processing steps:
1. Re-sampling each MR image to 256*256*256;
2. Using the N3 algorithm for intensity inhomogeneity correction;
3. Skull stripping;
4. Removing the cerebellum.
Does
If 4.5 will actually run on 5.0 preprocessed data, then I think it
should be ok, but it has been a very long time since 4.5 so I can't say
with any confidence.
doug
On 04/08/2015 01:33 PM, Katie Bettencourt wrote:
I had a question about using different components of Freesurfer 4.5
and
I had a question about using different components of Freesurfer 4.5 and
Freesurfer 5 in an analysis. We were wondering whether it is possible to
do preprocessing in Freesufer 5, but run the analysis on Freesufer 4.5 or
whether the output from preprocessing in Freesurfer 5 is not compatible
with
Dear all,
Hi, I am a beginner of FreeSurfer. Recently I have run recon-all and
preproc-sess on my MRI and fMRI images. Next I'd like to convert surface
images to AFNI-SUMA and convert fMRI images to volume space. I found that
the T1 image and its surface maps were not normalized and the fMRI
