Re: [Freesurfer] recon-all terminated in middle : continuing an analysis of an existing subject

2018-10-09 Thread Hoopes, Andrew
Hi Vasudev, if you're using freesurfer 6.0 or the development version, you can update the recon-all makefile by running the following (this might require sudo): cd $FREESURFER_HOME/bin mv recon-all.makefile recon-all.makefile.backup curl

Re: [Freesurfer] recon-all terminated in middle : continuing an analysis of an existing subject

2018-10-07 Thread Bruce Fischl
Hi Vasudev there is a patch to recon-all that fixes the -make all functionality, that should start wherever you left off. Andrew: can you post the location of the makefile patches? thanks Bruce On Sun, 7 Oct 2018, Dev vasu wrote: External Email - Use Caution Dear

[Freesurfer] recon-all terminated in middle : continuing an analysis of an existing subject

2018-10-07 Thread Dev vasu
External Email - Use Caution Dear all, I was trying to run recon-all, the pipeline terminated in middle now i would like to know if there is any way i can restart it from the point where it was terminated?. Thanks Vasudev ___