Re: [Freesurfer] recon -all in FS version 5.3 CentOS 6

2013-11-26 Thread pablo najt
: [Freesurfer] recon -all in FS version 5.3 CentOS 6 Hi Pablo it depends on how many cores you have Bruce On Thu, 21 Nov 2013, pablo najt wrote: Dear FS experts,I have one question about FS version 5.3 for CentOS 6. I am wondering up to how many recon -all for separate subjects I can run in parallel

Re: [Freesurfer] recon -all in FS version 5.3 CentOS 6

2013-11-26 Thread Bruce Fischl
how many subjects could I run in parallel with our workstation? Thank you for your support, Pablo Date: Thu, 21 Nov 2013 10:47:34 -0500 From: fis...@nmr.mgh.harvard.edu To: pablon...@hotmail.com CC: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] recon -all in FS version 5.3 CentOS 6 Hi

Re: [Freesurfer] recon -all in FS version 5.3 CentOS 6

2013-11-26 Thread pablo najt
use the a new recon -all command (-openmp 8 flag to recon-all)? Thanks.Pablo Date: Tue, 26 Nov 2013 16:41:31 -0500 From: fis...@nmr.mgh.harvard.edu To: pablon...@hotmail.com CC: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] recon -all in FS version 5.3 CentOS 6 Hi Pablo it also

Re: [Freesurfer] recon -all in FS version 5.3 CentOS 6

2013-11-26 Thread pablo najt
Hello Bruce,As far as I understood the FS version for Mac snow Leopard is not compatible with FS version 5.3 CentOS 6 (see response I got below). Is this correct or I could combine subjects processed with i386 and CentOS 6 releases? Pablo From: garikoitz@gmail.comDate: Wed, 20 Nov 2013

[Freesurfer] recon -all in FS version 5.3 CentOS 6

2013-11-21 Thread pablo najt
Dear FS experts,I have one question about FS version 5.3 for CentOS 6. I am wondering up to how many recon -all for separate subjects I can run in parallel. With the version of Snow Leopard 32b I was running two at a time and it took around 20 hours. Would I be able to run 6 subjects in

Re: [Freesurfer] recon -all in FS version 5.3 CentOS 6

2013-11-21 Thread Bruce Fischl
Hi Pablo it depends on how many cores you have Bruce On Thu, 21 Nov 2013, pablo najt wrote: Dear FS experts,I have one question aboutĀ FS version 5.3 for CentOS 6. I am wondering up to how many recon -all for separate subjects I can run in parallel. With the version of Snow Leopard 32b I was