Re: [Freesurfer] reducing a matrix

2017-08-02 Thread Douglas Greve
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N Greve > <gr...@nmr.mgh.harvard.edu> > Sent: Tuesday, July 25, 2017 2:27 PM > To: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] reducing a matrix > > Add another 0 after the register.lta >

[Freesurfer] reducing a matrix

2017-07-31 Thread Linda Eva Heidinger
Hello Dr. Greve, I ran the program below and got the following errors. Can you help??? I really would appreciate it. What does it mean?. -Linda ? Loading source LTA boldregister003.dat INFO: This REGISTER_DAT transform is valid only for volumes between COR types with c_(r,a,s) = 0. Loading

[Freesurfer] reducing a matrix

2017-07-31 Thread Linda Eva Heidinger
Hello Dr. Greve, I ran the program below and got the following errors. Can you help??? I really would appreciate it. What is wrong? -Linda ? Loading source LTA boldregister003.dat INFO: This REGISTER_DAT transform is valid only for volumes between COR types with c_(r,a,s) = 0. Loading GCAM

Re: [Freesurfer] reducing a matrix

2017-07-31 Thread Linda Eva Heidinger
__ > From: freesurfer-boun...@nmr.mgh.harvard.edu > <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N Greve > <gr...@nmr.mgh.harvard.edu> > Sent: Tuesday, July 18, 2017 3:31 PM > To: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] reducing a

Re: [Freesurfer] reducing a matrix

2017-07-25 Thread Douglas N Greve
esurfer-boun...@nmr.mgh.harvard.edu > <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N Greve > <gr...@nmr.mgh.harvard.edu> > Sent: Tuesday, July 18, 2017 3:31 PM > To: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] reducing a matrix > > try > &g

Re: [Freesurfer] reducing a matrix

2017-07-25 Thread Linda Eva Heidinger
e <gr...@nmr.mgh.harvard.edu> Sent: Tuesday, July 18, 2017 3:31 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] reducing a matrix try mri_vol2vol --gcam 005.mc.nii boldregister.dat $SUBJECTS_DIR/$subject/cvs/final_CVSmorph_tocvs_avg35_inMNI152.m3z $FREESURFER_HOME/subjects/cvs_avg35_inMN

Re: [Freesurfer] reducing a matrix

2017-07-18 Thread Douglas N Greve
try mri_vol2vol --gcam 005.mc.nii boldregister.dat $SUBJECTS_DIR/$subject/cvs/final_CVSmorph_tocvs_avg35_inMNI152.m3z $FREESURFER_HOME/subjects/cvs_avg35_inMNI152/mri.2mm/register.lta 0 output.nii.gz This will sample it down to a 2mm space within the CVS atlas (should overlap pretty well

[Freesurfer] reducing a matrix

2017-07-18 Thread Linda Eva Heidinger
Dear experts in freesurfer, I myself am a very beginner in freesurfer but I come with a difficult question to answer. As you can see from the script below, I am trying to obtain the Bold in CVS35MNI152 template space which hopefully has better properties for accuracy and determination of