Re: [Freesurfer] segmentHA_T2.sh issue, ERROR: cannot find transform file {Disarmed}

2018-10-30 Thread Chen Guoyang (IMH)
To: Freesurfer support list; Freesurfer support list Subject: Re: [Freesurfer] segmentHA_T2.sh issue, ERROR: cannot find transform file {Disarmed} [] External Email - Use Caution Hi Gouyang There's no T2 longitudinal pipeline available at the moment. In its absence, what you're doing is the way

Re: [Freesurfer] segmentHA_T2.sh issue, ERROR: cannot find transform file {Disarmed}

2018-10-30 Thread Iglesias Gonzalez, Eugenio
...@nmr.mgh.harvard.edu on behalf of Chen Guoyang (IMH) Sent: Tuesday, October 30, 2018 4:00:54 AM To: Freesurfer support list Subject: Re: [Freesurfer] segmentHA_T2.sh issue, ERROR: cannot find transform file {Disarmed} External Email - Use Caution Hi Martin, Thanks for the input! It worked

Re: [Freesurfer] segmentHA_T2.sh issue, ERROR: cannot find transform file {Disarmed}

2018-10-29 Thread Chen Guoyang (IMH)
, 2018 4:59 PM To: Freesurfer support list Subject: Re: [Freesurfer] segmentHA_T2.sh issue, ERROR: cannot find transform file Hi, Looks like the input is a multi frame image. Should only be single frame. Best Martin On 26. Oct 2018, at 13:52, Iglesias Gonzalez, Eugenio mailto:e.igles

Re: [Freesurfer] segmentHA_T2.sh issue, ERROR: cannot find transform file

2018-10-27 Thread Martin Reuter
-To: Freesurfer support list > Date: Friday, 26 October 2018 at 11:35 > To: "freesurfer@nmr.mgh.harvard.edu" > Subject: [Freesurfer] segmentHA_T2.sh issue, ERROR: cannot find transform file > > External Email - Use Caution > > Dear Freesurfer exper

Re: [Freesurfer] segmentHA_T2.sh issue, ERROR: cannot find transform file

2018-10-26 Thread Iglesias Gonzalez, Eugenio
From: on behalf of "Chen Guoyang (IMH)" Reply-To: Freesurfer support list Date: Friday, 26 October 2018 at 11:35 To: "freesurfer@nmr.mgh.harvard.edu" Subject: [Freesurfer] segmentHA_T2.sh issue, ERROR: cannot find transform file External Email - Use Caution Dear Free

[Freesurfer] segmentHA_T2.sh issue, ERROR: cannot find transform file

2018-10-26 Thread Chen Guoyang (IMH)
External Email - Use Caution Dear Freesurfer experts, I am currently attempting to include an additional T2 MRI scan in the segmentation of our T1 scan. The freesurfer version that I'm using is the freesurfer-darwin-OSX-ElCapitan-dev-20180919-4c582fa (developmental version).