Re: [Freesurfer] selxavg3-sess question

2016-03-11 Thread Douglas N Greve
Yes, it is. I forgot that version 5.3 uses the brain mask from the first run. This is fixed in version 6. On 03/09/2016 02:42 PM, Ji Won Bang wrote: > Dear. Freesurfer experts. > > Hi. > > I'm pretty sure that this error is due to the different number of > slices in different runs > > I ran

Re: [Freesurfer] selxavg3-sess question

2016-03-09 Thread Ji Won Bang
Dear. Freesurfer experts. Hi. I'm pretty sure that this error is due to the different number of slices in different runs I ran preproc-sess -s $SUBJECT -df sessdirfile -fsd bold_Retino -nosmmth -per-run -force Then I ran selxavg3-sess -s $SUBJECT -analysis retino -df sessdirfile I thought

[Freesurfer] selxavg3-sess question

2010-11-03 Thread Eyal Dechter
Hi, I'm analyzing fMRI data using freesurfer 5.0.0. I run into the following error when running selxavg3-sess. Any suggestions? Thanks, Eyal *

Re: [Freesurfer] selxavg3-sess question

2010-11-03 Thread Douglas N Greve
That version of fsfast is not version 5. The version ID for fast_selxavg3 is from april 2009. doug Eyal Dechter wrote: Hi, I'm analyzing fMRI data using freesurfer 5.0.0. I run into the following error when running selxavg3-sess. Any suggestions? Thanks, Eyal