Perhaps the problem has already been solved but I just ran into the same issue
(on OS X 10.8.2). After poking around, what I found was that while the current
AFNI distribution does not have a file named 3dvolreg.afni, it does have one
named 3dvolreg. I'm guessing the problem is that it has
It should be in $FREESURFER_HOME/bin/3dvolreg.afni
On 05/21/2013 02:49 PM, Joseph Dien wrote:
Perhaps the problem has already been solved but I just ran into the
same issue (on OS X 10.8.2). After poking around, what I found was
that while the current AFNI distribution does not have a
Hi Doug,
I was running preproc-sess in the newly released freesurfer-5.2.0. The
command I used was:
preproc-sess -sf sessid -df sessdir -fsd bold -surface fsaverage lhr
-mni305 -fwhm 6 -per-run
The program failed with the following errors:
3dvolreg.afni -verbose -dfile 004/fmcpr.mcdat
Hi Yuhong,
What happens when you run 3dvolreg.afni from the command line without
any args?
doug
On 03/21/2013 12:38 PM, Y.V. Jiang wrote:
Hi Doug,
I was running preproc-sess in the newly released freesurfer-5.2.0. The
command I used was:
preproc-sess -sf sessid -df sessdir -fsd bold
Hi Doug,
Thanks for the reply. From the command line the command 3dvolreg.afni
returned the following error:
3dvolreg.afni: symbol lookup error: 3dvolreg.afni: undefined symbol:
afni_ncerr
-Yuhong
On Thu, Mar 21, 2013 at 12:08 PM, Douglas N Greve gr...@nmr.mgh.harvard.edu
wrote:
Hi Yuhong,
what platform are you using?
On 03/21/2013 01:24 PM, Y.V. Jiang wrote:
Hi Doug,
Thanks for the reply. From the command line the command 3dvolreg.afni
returned the following error:
3dvolreg.afni: symbol lookup error: 3dvolreg.afni: undefined symbol:
afni_ncerr
-Yuhong
On Thu, Mar 21,
Hi Doug,
I am using Linux: x86_64 GNU/Linux. Thanks.
-Yuhong
On Thu, Mar 21, 2013 at 12:57 PM, Douglas N Greve gr...@nmr.mgh.harvard.edu
wrote:
what platform are you using?
On 03/21/2013 01:24 PM, Y.V. Jiang wrote:
Hi Doug,
Thanks for the reply. From the command line the command
which version of CentOS? Also, can you send me the result of
cat $FREESURFER_HOME/build-stamp.txt
On 03/21/2013 02:09 PM, Y.V. Jiang wrote:
Hi Doug,
I am using Linux: x86_64 GNU/Linux. Thanks.
-Yuhong
On Thu, Mar 21, 2013 at 12:57 PM, Douglas N Greve
gr...@nmr.mgh.harvard.edu
Hi Doug,
Here's the output from cat /proc/version:
Linux version 2.6.32-45-generic (buildd@batsu) (gcc version 4.4.3 (Ubuntu
4.4.3-4ubuntu5.1) ) #101-Ubuntu SMP Mon Dec 3 15:39:38 UTC 2012
This is the result of cat $FREESURFER_HOME/build-stamp.txt
H, it looks like you are missing a library. Do you have afni
installed? Maybe Nick or Zeke can chime in. He's getting the following
error:
3dvolreg.afni: symbol lookup error: 3dvolreg.afni: undefined
symbol: afni_ncerr
When I run it on minerva (which I think is centos4.0 x64) I get:
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