Hi Martin,
I think this is what you're looking for. If not, let me know.
recon-all -base 137_S_0158_template -tp
/Applications/freesurfer/subjects/corinna/ADNI/BL/137_S_0158/mri/norm.mgz
-tp
/Applications/freesurfer/subjects/corinna/ADNI/12mos/137_S_0158/mri/norm.mgz
-tp
Hi Corinna,
you need a single folder with all subjects and all time point:
so the subjects directory will look like:
me1
me2
me3
you1
you2
...
You can create such a folder and insert symbolic links to the original
subject folders if you want to keep your structure.
Then create the base in
Hi corinna,
Can you send the corresponding call to recon-all that your script generates?
Best Martin
On May 14, 2012, at 18:27, Corinna Bauer corinna...@gmail.com wrote:
Hello all,
I am trying to create a template for longitudinal processing and am running
into some problems generating the
