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Thx Doug, much appreciated.
Jim
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of Douglas N. Greve
Sent: Tuesday, August 31, 2021 12:00 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] WM or Pial edits to correct surfaces
Hi Jim, I know it has been a while, but I have tracked down the source
of the problem with the pial surface. I can go into detail if you want,
but the fix is to add -no-numakeuchar to recon-all. I noticed that there
are some places where the white surface does not extend far enough. This
is
: [Freesurfer] WM or Pial edits to correct surfaces
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There might be a couple things happening. First, I would try adding a few
control points in that area; make sure they are in true WM in voxels that have
a value less than 110 on the brain.mgz file. This might help push
There might be a couple things happening. First, I would try adding a
few control points in that area; make sure they are in true WM in voxels
that have a value less than 110 on the brain.mgz file. This might help
push the white surface further out (the WM in that gyrus is very thin).
It might
