you can only give it one dicom file from the series, it will find the rest.
On 2/14/19 4:11 PM, Daniel Callow wrote:
>
> External Email - Use Caution
>
> As you can see the folder has 65 DICOM images labeled
> images01.dcm-images65.dcm.
>
> I tried
>
> dt_recon --i
>
I never saw an email with the result of the ls -l command
On 2/14/19 3:36 PM, Daniel Callow wrote:
>
> External Email - Use Caution
>
> Hi Douglas,
>
> I was unsure if the emails I had been replying with were going
> through. They did not seem to come up on the mailing list so I wasn’t
External Email - Use Caution
Hi Douglas,
I was unsure if the emails I had been replying with were going through.
They did not seem to come up on the mailing list so I wasn’t sure if they
had reached you. I recently responded to your question about the ls -l path
output and the
what happens when you run
ls -l /Volumes/DANIEL/tutorial_data/diffusion_recons/AES101.Ex/1-65.dcm
On 2/13/19 6:45 PM, Daniel Callow wrote:
>
> External Email - Use Caution
>
> Here it is.
>
>
> [hlhp-105:DANIEL/scripts/dti_freesurfer] administrator% dt_recon
> --debug --i
>
External Email - Use Caution
Here it is.
[hlhp-105:DANIEL/scripts/dti_freesurfer] administrator% dt_recon --debug
--i /Volumes/DANIEL/tutorial_data/diffusion_recons/AES101.Ex/1-65.dcm --s
AES101.Ex --o /Volumes/DANIEL/tutorial_data/dtrecon
set echo = 1 ;
breaksw
breaksw
end
what happens when you run
ls -l /Volumes/DANIEL/tutorial_data/diffusion_recons/AES101.Ex/1-65.dcm
On 2/13/19 6:27 PM, Daniel Callow wrote:
>
> External Email - Use Caution
>
> The error output that accompanies the command.
>
>
> administrator% dt_recon --debug --i
>
Yes. Can you run it with --debug with the slash in front of "Volumes"?
On 2/13/19 6:25 PM, Daniel Callow wrote:
>
> External Email - Use Caution
>
>
> Is this what you mean by no variables??
>
> dt_recon --debug --i
> /Volumes/DANIEL/tutorial_data/diffusion_recons/AES101.Ex/1-65.dcm --s
External Email - Use Caution
The error output that accompanies the command.
administrator% dt_recon --debug --i
/Volumes/DANIEL/tutorial_data/diffusion_recons/AES101.Ex/1-65.dcm --s
AES101.Ex --o /Volumes/DANIEL/tutorial_data/dtrecon
set echo = 1 ;
breaksw
breaksw
end
end
External Email - Use Caution
Is this what you mean by no variables??
dt_recon --debug --i
/Volumes/DANIEL/tutorial_data/diffusion_recons/AES101.Ex/1-65.dcm --s
AES101.Ex --o /Volumes/DANIEL/tutorial_data/dtrecon
*Daniel Callow*
*PhD Student, Neuroscience and Cognitive Science*
can you send the command line without the variables?
On 2/13/19 5:19 PM, Daniel Davidson Callow wrote:
>
> External Email - Use Caution
>
> Thanks for pointing that out! Unfortunately after making the change
>
> dt_recon --debug --i
>
External Email - Use Caution
Hello Daniel.
It looks like you need a slash in front of Volumes for the path after —I/Volumes
- R.
On Feb 13, 2019, at 14:44, Daniel Davidson Callow dcal...@umd.edu
wrote:External Email - Use
CautionHello,I am trying to run
dt_recon on my dtidata
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