Re: [Freesurfer] isxconcat-sess question..

2011-03-31 Thread Douglas N Greve
Hi Krishna, if you have a proper freesurfer analysis and registration to the anatomical, it should work fine. doug Krishna Srihasam wrote: Hi, Is there a way to use” isxconcat-sess” to average monkey fMRI data? i.e. I have two groups of monkeys (say, test and control groups) and I want

Re: [Freesurfer] isxconcat-sess question

2008-03-12 Thread Bill Monaco
Hi Doug, I just tried to type in the command you sent me in the dev environment and got this error: ERROR: Flag -talxfm unrecognized. -a MR-sm6-stc -m mask -o MR-group-allsubjects-sm6-stc/MR-sm6-stc/tal.masks.mgz -interp nearest -fsd bold -talres 2 -talxfm fsl-ta1.xfm -sf

Re: [Freesurfer] isxconcat-sess question

2008-03-11 Thread Doug Greve
I've just added something to do this. Add -talxfm fsl-tal.xfm to the cmd line. Live on next dev update. doug Bill Monaco wrote: Hi, I wanted to know if it's possible to run isxconcat-sess but have it use a different talairach transform when it calls mri_vol2vol. Currently the default