BTW, this should not be a problem in the next version
On 10/07/2018 08:29 AM, Jasper van den Bosch wrote:
>
>
> Michael, I can't thank you enough.
>
> Knowing that it writes to /tmp made all the difference.
> In my case I mounted an external directory on /tmp instead of the
> sessiondir
External Email - Use Caution
Michael, I can't thank you enough.
Knowing that it writes to /tmp made all the difference.
In my case I mounted an external directory on /tmp instead of the
sessiondir approach, but it now runs fine.
Jasper
On Fri, 5 Oct 2018 at 23:47, Michael Krause
Dear *,
we also run Freesurfer on a cluster and are starting to use singularity, so
naturally I'm curious about this issue.
I was able to reproduce the error with a clean singularity run (-c -e).
Then, I rebuilt a container to start nu_correct with "strace -f -e
open,write" and I believe I found
Not that I know of, but this is not a native FS script, it comes from the MNI,
so it could be doing something we don't understand. Can you do an experiment
for us? Can you run it outside of the container using reprozip (or something
equivalent) to see all the files it touches?
On 10/5/18 5:31
