Re: [Freesurfer] qdec problem

2016-09-07 Thread Douglas N Greve
Sounds like the GUI is doing strange things. What platform are you running on? What version of FS? Can you try it on a different type of computer? On 09/07/2016 08:20 AM, wanghaibao wrote: > Hi, /Douglas/ > thank you for your reply. > > yes, the number in the text box cannot be changed,

Re: [Freesurfer] qdec problem

2016-09-06 Thread Douglas N Greve
Can you not just change the number in the text box? On 09/06/2016 12:49 PM, wanghaibao wrote: > Hello,*Douglas* > I used the freesurfer 5.3 in fedora 20,there is a question in my > reseach,may be not a question! > When i view the results of analysis in the qdec window,why did i > cannot change

Re: [Freesurfer] qdec problem

2015-08-05 Thread Douglas N Greve
The error message is: ERROR: The stats file /Users/i_geschwind/Desktop/qdec_test/CDPAD02WJD_recon/stats/aseg.stats is not found or is too small to be a valid statsfile Have you checked this stat file? It is a text file, so you can just look inside it. On 08/04/2015 10:19 PM, geschwind2013

Re: [Freesurfer] qdec problem

2015-08-03 Thread Douglas Greve
A: freesurfer@nmr.mgh.harvard.edu Ogg: Re: [Freesurfer] qdec problem Sorry, I'm having a problem understanding your question. Can you elaborate? doug On 07/27/2015 04:32 AM, marco.m...@tin.it wrote: Hi, I'm Marco from Italy, I've problem with qdec because qdec produces these files

Re: [Freesurfer] qdec problem

2015-07-27 Thread Douglas N Greve
Sorry, I'm having a problem understanding your question. Can you elaborate? doug On 07/27/2015 04:32 AM, marco.m...@tin.it wrote: Hi, I'm Marco from Italy, I've problem with qdec because qdec produces these files in the stats_table directory. How you can see there aren't all those

Re: [Freesurfer] qdec problem

2014-07-30 Thread Douglas N Greve
The DOSS option has been removed (DODS only). Can you give more info about the threshold problem? On 07/30/2014 04:27 AM, Emilia Johansson wrote: Hello, When I use qdec I can´t change the threshold values and I don't have the Design Matrix Type option (DODS, DOSS). I'm using ubuntu

Re: [Freesurfer] Qdec - problem with the Generate Stats Data Import button.

2010-07-07 Thread Gaëlle Leroux
, it works perfectly fine. Thanks for your help, Gaëlle. -Message d'origine- De : Krish Subramaniam [mailto:kr...@nmr.mgh.harvard.edu] Envoyé : mardi 6 juillet 2010 17:47 À : Gaëlle Leroux Cc : freesurfer@nmr.mgh.harvard.edu Objet : Re: [Freesurfer] Qdec - problem with the Generate Stats

Re: [Freesurfer] Qdec - problem with the Generate Stats Data Import button.

2010-07-06 Thread Krish Subramaniam
Hi Gaelle This seems to be an error due to Python's warning module being deprecated in Python 2.6. I'll update the sources so as to accommodate this change. Meanwhile, the quickest fix is to open up nano $FREESURFER_HOME/bin/asegstats2table and comment out the following lines ( put a # at

Re: [Freesurfer] qdec problem

2010-02-08 Thread Nick Schmansky
what is the error message that is output to the terminal after this command is run? qdec outputs everything it is doing to the terminal window. n. On Mon, 2010-02-08 at 13:48 +0100, Hannah wrote: Hi, I have a problem using qdec, which I don't know how to solve- I get the following

Re: [Freesurfer] Qdec problem

2009-10-08 Thread Nick Schmansky
can you run that command from the terminal? that is: cd [path]/qdec mri_glmfit (as copied from terminal output). it might give a more descriptive error. also, another obvious: make sure you have enough disk space. On Thu, 2009-10-08 at 11:14 -0400, Dankner, Nathan (NIH/NIMH) [F] wrote:

Re: [Freesurfer] Qdec problem?

2008-11-13 Thread Doug Greve
There are two things you can do here. One is to create your own design matrix in a text file and pass it to mri_glmfit with the --X (instead of using an fsgd file). If you want to stay with the fsgd, then you can spec DODS (this will set up one regressor for MMSE instead of two). doug