Re: [Freesurfer] recon-all fails in Freesurfer7.1 on docker

2021-05-26 Thread Paul Wighton
__ >> From: freesurfer-boun...@nmr.mgh.harvard.edu < >> freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Paul Wighton < >> p...@corticometrics.com> >> Sent: Tuesday, May 11, 2021 8:13 AM >> To: Freesurfer support list

Re: [Freesurfer] recon-all fails in Freesurfer7.1 on docker

2021-05-26 Thread Paul Wighton
> p...@corticometrics.com> > Sent: Tuesday, May 11, 2021 8:13 AM > To: Freesurfer support list > Subject: Re: [Freesurfer] recon-all fails in Freesurfer7.1 on docker > > External Email - Use Caution > > Hi Lara, > > What container are you using? Is it `freesurfer/fre

Re: [Freesurfer] recon-all fails in Freesurfer7.1 on docker

2021-05-17 Thread Lara Foland-Ross
urfer-boun...@nmr.mgh.harvard.edu on behalf of Paul Wighton Sent: Tuesday, May 11, 2021 8:13 AM To: Freesurfer support list Subject: Re: [Freesurfer] recon-all fails in Freesurfer7.1 on docker External Email - Use Caution Hi Lara, What container are you using? Is it `freesurfer/freesu

Re: [Freesurfer] recon-all fails in Freesurfer7.1 on docker

2021-05-11 Thread Paul Wighton
-0. -0. -0. 1. > > > From: freesurfer-boun...@nmr.mgh.harvard.edu < > freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N. Greve < > dgr...@mgh.harvard.edu> > Sent: Monday, May 10, 2021 1

Re: [Freesurfer] recon-all fails in Freesurfer7.1 on docker

2021-05-10 Thread Lara Foland-Ross
of Douglas N. Greve Sent: Monday, May 10, 2021 12:25 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] recon-all fails in Freesurfer7.1 on docker Can you run mri_info /usr/local/freesurfer/subjects/bert/mri/rawavg.mgz On 5/10/2021 1:00 PM, Lara Foland-Ross wrote

Re: [Freesurfer] recon-all fails in Freesurfer7.1 on docker

2021-05-10 Thread Douglas N. Greve
Can you run mri_info  /usr/local/freesurfer/subjects/bert/mri/rawavg.mgz On 5/10/2021 1:00 PM, Lara Foland-Ross wrote: External Email - Use Caution Hello, I'm trying to run Freesurfer7.1 on docker. I have a macbook air with an apple chip with BigSur as the OSX. To test out the