Hi Longchuan
I'm not sure what space the volume average is constructed in - Doug would
know. Probably talairach, in which case it won't match the surfaces well.
Can you send along your mris_fill command line? It shouldn't produce an
empty volume. There's no reason to look at the inflated
For many non-human primate species, volume templates already exist. I would
recommend using them and aligning your surface templates to them to aid in
the ability to compare studies across laboratories in the same space.
For rhesus, see the 112RM-SL atlas.
Best Regards, Donald McLaren
Hi,
After upgrading to FreeSurfer 5.2.0, the command with -subcortseg flag
exited with the following error.
MRISread(/usr/local/freesurfer/5.2.0/dist/subjects/test/surf/lh.white):
could not open file
I confirmed that the -autorecon1 stage finished without error.
In v5.1.0 it worked fine, so
Hi FreeSurfer experts,
I have been working with a dataset we have run through FreeSurfer 5.0 and am
interested in the medial orbitofrontal region (Desikan atlas). We have an
unexpected surface area finding, so we want to rule out any systematic error in
the generation of the area measurements.
