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Good afternoon,
I would like to know is there a way to run recon-all on subjects in which
manual edits have been done on the brainmask.mgz files?
Or at least incorporate manually edited brainmask files into the recon-all
process?
Thanks!
Asim
Hi Asim
if you edited the brainmask in recon-mode in freeview the edits will be
detected and retained.
cheers
Bruce
On Mon, 14 Oct 2019, Asim Hassan wrote:
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Good afternoon,
I would like to know is there a way to run recon-all on subjects in
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Hi Kersten,
That would be very helpful thank you. What email address should I designate as
the recipient when using Freesurfer FileDrop?
Kind regards,
Bronwyn Overs
Research Assistant
Neuroscience Research Australia
Margarete
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Here is how I made the label into a surface overlay:
mri_label2vol --label $label/lh.7Networks_6.label --temp
/data/project/vislab/a/HCP_diff_Sara/fsaverage/mri/orig.mgz --identity --o
$vols/lh.7Networks_6.nii
mri_vol2surf --src
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Dear Juan Eugenio, thanks for your answer. I tried to do with the corrected
images and wit the raw ones (before the correction), and I got the same
error. Then I tried with two patients more and happened the same. I don´t
know if it is due to the dev
Sorry for the delay ...
First, run selxavg3-sess with -fwhm ( you might need to delete the
bold/analysis folder to get it to re-run).
cd session/bold/analyis
There will be a filed called fwhm.dat. Look in that. Depending upon how much
you smoothed it might be something like 10.395. This is the
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Freesurfers,
I am trying to use mri_mask using surface overlays. I made a label into a
volume and then into a surface with 1s inside the label and 0s outside the
label. I want to make a connectivity map surface overlay with values only
within my
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Time is running out to vote on our BIDS Governance document
(https://docs.google.com/document/d/1R-J2lL9V_wIkYhye4zH-feyl4P4J8NyO40rIYyY141o/edit)
and for the inaugural Steering Group
Hi Sara
we will need to know the actual commands and the screen output from them
that you ran
cheers
Bruce
On Mon, 14 Oct 2019, Sims, Sara A (Campus) wrote:
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Freesurfers,
I am trying to use mri_mask using surface overlays. I made a label into
