Re: [Freesurfer] FreeSurfer mal list - please remove me

2019-10-17 Thread Bruce Fischl
or pretty much any mailing list email - they should all come with an "unsubscribe" link On Thu, 17 Oct 2019, Damion V Demeter wrote: External Email - Use Caution https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer Check the bottom of the page you used to sign up. :)

Re: [Freesurfer] ERROR gtmseg

2019-10-17 Thread Marina Fernández
External Email - Use Caution Dear Douglas, Did you get the subjects? I hope I loaded them correctly. Best regards, Marina. ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu

[Freesurfer] FreeSurfer mal list - please remove me

2019-10-17 Thread Adam Rytina
External Email - Use Caution Hello all, few days ago I subscribed to the FreeSurfer list in order to get e-mails regarding the FreeSurfer issues. I will not use FreeSurfer anymore. Hence, please, could you remove me from this list? Thanks a lot Adam

Re: [Freesurfer] FreeSurfer mal list - please remove me

2019-10-17 Thread Damion V Demeter
External Email - Use Caution https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer Check the bottom of the page you used to sign up. :) On Thu, Oct 17, 2019 at 2:02 AM Adam Rytina wrote: > External Email - Use Caution > > Hello all, > > few days ago I

Re: [Freesurfer] Tracula question

2019-10-17 Thread Alan Francis
External Email - Use Caution Thanks Anastasia. That is exactly what happened and we have fixed it. best, Alan On Tue, Oct 15, 2019 at 5:37 PM Yendiki, Anastasia wrote: > Hi Alan - It looks like it may be due to a mismatch between the > bvals/bvecs files and the number of

[Freesurfer] FSGD file formatting for Xhemi

2019-10-17 Thread Jose Graterol
External Email - Use Caution Dear Freesurfer Community, I have a question regarding the formatting of the FSGD file while doing an analysis with Xhemi. First the --y file was created as previously explained in another discussion (

[Freesurfer] aseg.stats format FreeSurfer 5 versus 6

2019-10-17 Thread Tim Schäfer
External Email - Use Caution Dear fs experts, I'm parsing aseg.stats files for subjects to extract global brain measures and noticed that at least 2 names changed from FreeSurfer 5.1 versus FreeSurfer 6. It seems that: * "EstimatedTotalIntraCranialVol" is in v6, but

[Freesurfer] mri_pretess: Cannot allocate memory

2019-10-17 Thread Peled, Noam
Dear group, When trying to run mri_pretess, I'm getting this error: znzTAGskip: tag=809120822, failed to calloc 1802706944 bytes! Cannot allocate memory Here is the full command I'm using (in the Martinos center, using ver6 stable): mri_pretess

Re: [Freesurfer] mri_pretess: Cannot allocate memory

2019-10-17 Thread Hoopes, Andrew
Hi Noam, these seem to be corrupted in a way that makes it so only freesurfer 5 can read them. If you source 5.3 and 'resave' the vols with mri_convert, like: mri_convert aseg.mgz aseg.mgz That should fix whatever the problem is and allow you to load them in v6+ best Andrew

[Freesurfer] QDEC cluster output

2019-10-17 Thread Lara Foland-Ross
External Email - Use Caution Hi Freesurfer experts, I’m running a simple qdec analysis to examine group differences in surface measures between a patient and control group, controlling for age and TBV. I noticed that when I run Monte Carlo Simulations (threshold=1.3, sign=abs),