[Freesurfer] BIDS v1.3.0 release and next focus

External Email - Use Caution The Brain Imaging Data Structure (BIDS) community is pleased to announce version 1.3.0 of the BIDS standard! This release includes the addition of genetic

Re: [Freesurfer] Error in Tracula-all -prep

External Email - Use Caution Thanks Freesurfer developer I have followed what you have suggested and it did work for me. Thanks once again for your help. Regards Salah On Sat, 11 Apr 2020, 5:54 am Yendiki, Anastasia, wrote: > Hi Salah - You're probably running into this

[Freesurfer] Question on using T2 or FLAIR data to improve pial surfaces

External Email - Use Caution Dear FreeSurfer experts, I have both T2 and FLAIR images for the majority of the subjects in my study, and I want to use them to improve pial surface reconstruction during recon-all as explained in [1]. My questions are: 1) In general, should I

Re: [Freesurfer] Trac-All Error

Hi Jessica - A couple of things to fix. The bvecs file has commas in it. The bvals file, if you view it with the more command on linux, you'll see that instead of line changes it has "^M" in between the values. This can happen if it's saved in a windows text editor. You can open it in a linux

[Freesurfer] Data onto the Freesurfer surface

External Email - Use Caution Hi all, I apologise for cross-posting to both FSL and Freesurfer lists. I am trying to use an analysis package that works on surface based data (SamSrf). I have ran Feat and have a filtered_func file which is of course the motion corrected/unwarped

[Freesurfer] Manipulating MRI volume data in Matlab

External Email - Use Caution Dear Freesurfers, I recently started working on an brain sMRI related project. I have a minor (may be a major) issue. when I generate label files for a tissue e.g midbrain by using the command mri_vol2label --c

Re: [Freesurfer] Manipulating MRI volume data in Matlab

On 4/15/2020 11:17 AM, Safi Ullah . wrote: External Email - Use Caution Dear Freesurfers, I recently started working on an brain sMRI related project. I have a minor (may be a major) issue. when I generate label files for a tissue e.g midbrain by using the command mri_vol2label