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Dear Rahul,
I just used the wiki of the Freesurfer functions, the information is very
complete. If you want to use Freesurfer, you can start by doing the
cortical reconstruction process for each subject (
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Thank you so much. Now I at least get a direction from where to start.
Regards:
Rahul Sharma
Research Scholar
NIT Silchar
Assam
9827834360
*"Manners Maketh Man"*
On Wed, Jan 18, 2023 at 5:36 PM Marina Fernández <
marina.fdez.alva...@gmail.com>
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Hello FreeSurfer Community!
I previously asked a question about volume quantification using an external
atlas (in fact, there are 20 brain masks corresponding to the regions of
interest). I managed to perform the quantification with the following
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Dear FreeSurfer experts,
I hope this email finds you all well.
I have two relatively basic questions that I am hoping to get some help with.
My basic planned processing pipeline is:
Run initial recon-all with gcut and ws flags
Edit white matter/pial
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Hi there,
I'm looking to use the *Dijkstra matlab code* provided by freesurfer,
titled 'dijk.m'. It calculates the *shortest path* from node 's' to node
't'. I want to use this to calculate the distance from 1 vertex to another
on an inflated cortical
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Hey, I'm trying to run "trac-all -prep -c
$TUTORIAL_DATA/diffusion_tutorial/dmrirc.tutorial" but keep getting this error
: /shared/centos7/freesurfer/7.3.2/bin/free/sources.csh: No such file or
directory.
My colleague ran this step on the same data
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Hi Doug,
That solved the problem like a charm. By the way, the volume came from
brain.mgz.
Thank you!
Regards,
Sean
On Sat, Jan 14, 2023 at 12:28 AM Douglas N. Greve
wrote:
> What volume did the TF.label come from? Whatever it is, try adding
>
Hi Nita,
What is your FREESURFER_HOME points to? It should be set to your Freesurfer
7.3.2 install directory.
Best,
Yujing
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of Nita Akoh
Sent: Wednesday, January 18, 2023 5:12 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer]
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Dear FreeSurfer experts,
I dealing with some issues regarding skull stripping in FreeSurfer (v7.1.1).
It seems like the conventional approaches (e.g., adjusting -wsthresh) doesn’t
seem to help. As well, applying these preprocessing steps to the raw
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The output shows the command running on Ubuntu 18 linux and getting an error
from the shell for a bad file descriptor (fd),Linux holowach 5.3.0-53-generic
#47~18.04.1-ubuntu SMP Thu May 7 13:10:50 UTC 2020 x86_64 x85_64 x86_64
GNU/Linuxsh: 1: Syntax
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