Hi Amir,
Thanks for the update. I don’t have answer for you. I’m just curious if you
tried Freesurfer 7.2 and what is the outcome.
Best,
Yujing
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of AmirHussein Abdolalizadeh
Sent: Tuesday, February 7, 2023 9:16 AM
To: Freesurfer support
External Email - Use Caution
Hi all,
I'm trying to run preproc-sess on a resting state MRI and I've tried to
define python to python3 path. I assume it's trying to call python into the
environment but I'm not sure how to do this. I'm running a macOS m1 apple
chip.
I've tried
External Email - Use Caution
Hi again,
An update:
Repeating the analysis using 7.1.0 ends without any errors. Visually
checking the results also seems totally fine. I think it is something
specific to 7.3.2. Of note, my subjects are elderly with variable degrees
of white matter
External Email - Use Caution
Hello!
I would like to try FreeSurfer on VM, but I need the password for
archive. I hope that this is the right place to ask for it. (I can't
find other e-mail address).
Many thanks!
___
Freesurfer
Hi Lisa,
You can find information about those scripts here
https://surfer.nmr.mgh.harvard.edu/fswiki/HippocampalSubfieldsAndNucleiOfAmygdala
Executing the corresponding script with the flag -help should provide some
information too.
Best,
Yujing
From: freesurfer-boun...@nmr.mgh.harvard.edu
External Email - Use Caution
Hi,
I'm trying to create a freesurfer (v7.3.3) package definition for guix. I have
some problems during
freesurfers configure step though. I'm using the following definitions to build
freesurfer (this may
not help much if you don't know guix, but
Hi,
The following is taken from
https://github.com/ComaRecoveryLab/Lesion_Correction as mentioned in this
paper https://www.sciencedirect.com/science/article/pii/S2215016120302144
“
Qualitative and Quantitative Assessment of MRI Data
SNR: We calculated SNR for each subject using the
Hi Andrew,
I have added an option ‘--frobnorm-thresh <>’ to mri_robust_template in
Freesurfer dev branch. It can be used to set threshold for
MyMatrix::RotationMean(). The default is 0.0001.
Increasing the threshold didn’t help when I tested it with your data. The
change is not in release
External Email - Use Caution
Hi Yujing,
Thank you very much for clarifying and letting me know of your testing results. I really appreciate all
your help with this issue.
Andrew
*Andrew Beaudin, PhD* | Research Associate
University of Calgary | Cumming School of
External Email - Use Caution
Hi everyone,
I’d like to receive the password for the 7z ova file please. The file i have is
FS_7_2_0_ubuntu_18_04_06.ova.7z.
Thank you,
Andre
___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
External Email - Use Caution
Dear FreeSurfer experts,
Please, I need your assistance and guidance on calculating the
contrast-to-noise ratio (CNR) and signal-to-noise-ratio (SNR) of White
matter, Gray matter, and CSF of the brain after recon-all.
Thank you
11 matches
Mail list logo