FreeSurfer does read and use the qform, but only if the sform is not
valid. When writing, it writes the qform as the same as the sform.
doug
Strien, N van wrote:
Hi
Is the information concerning the
q-form header field in Nifti-1 still accurate (in relation to
freesurfer):
Hi:
I have one question regarding the parcellate_subject and morph_subject
After recon-all is complete, I setenv of CSURF_DIR to $FREESURFER_HOME,
and then run parcellate_subject, got following error:
reading atlas from
/usr/pubsw/packages/freesurfer/average/lh.atlas2002_simple.gcs...
GCSAread:
Hi:
I have one question regarding the parcellate_subject and morph_subject
After recon-all is complete, I setenv of CSURF_DIR to $FREESURFER_HOME,
and then run parcellate_subject, got following error:
reading atlas from
/usr/pubsw/packages/freesurfer/average/lh.atlas2002_simple.gcs...
GCSAread:
Hello all,
I am having some trouble in using the freesurfer
version I had downloaded.The FREESURFER_HOME file is
missing and so I cannot source or setenv anytime I
want to use it.Do I need to tar and unzip again or is
there any other way?
Thanks in advance
Chacko.
Hi Bruce,
thanks for the prompt response. I'm sorry, but I don't quite understand
what you mean by the determinant of the talairach xform is an excellent
predictor of TIV? Could you please elaborate on this? I'm trying to
understand how the program calculates the volume of TIV. As my current
Randy: can you point HweeLing at your and Denise's paper on eTIV?
thanks,
Bruce
On Wed, 17 May 2006, Lee HL wrote:
Hi Bruce,
thanks for the prompt response. I'm sorry, but I don't quite understand
what you mean by the determinant of the talairach xform is an excellent
predictor of TIV?
HweeLing,
Here's a link to the eTIV wiki page, containing a link to the paper:
http://surfer.nmr.mgh.harvard.edu/fswiki/eTIV
On Tue, 2006-05-16 at 16:16 -0400, Bruce Fischl wrote:
Randy: can you point HweeLing at your and Denise's paper on eTIV?
thanks,
Bruce
On Wed, 17 May 2006,
