Re: [Freesurfer] Anatomical Stats

you could skip the aseg but then you'll need to manually edit the surfaces, which can be time consuming. Running on more than one computer isn't an option for you? On Wed, 28 Jun 2006, Anil Roy wrote: Hi Everyone, Is there a way to process the minc files I have and only obtain the

Re: [Freesurfer] Anatomical Stats

Yes, that is definitely an option although only one of our machines currently runs Linux. I'm sure we can work around that. Thanks for all the help. I'm sure we'll have more questions for you..:)Anil. On 6/29/06, Bruce Fischl [EMAIL PROTECTED] wrote: you could skip the aseg but then you'll need to

[Freesurfer] FreeSurfer Newbie can't get working with FSL on Mac OS 10.4

Hello, I am in need of some help. I have spent the last two days trying to get fsl and freesurfer to play well together. I have the newest version of FSL installed and it works perfectly. I then installed freesurfer per the instructions listed in the wiki. After these steps, freesurfer works,

RE: [Freesurfer] FreeSurfer Newbie can't get working with FSL onMac OS 10.4

Marc, Or you can set the path to your own, newer fsl with something like setenv FSL_DIR /usr/local/fsl if you'd rather not use the fsl distro that comes with freesurfer. Don -Original Message- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of Nick

Re: [Freesurfer] surface area

White. doug Sasha Wolosin wrote: Dear all, Are the regional surface areas computed by mris_anatomical_stats using the ?h.white surface or the ?h.pial surface? Thanks, Sasha Disclaimer: The materials in this e-mail are private and may contain Protected Health Information. Please note that

Re: [Freesurfer] mri_watershed

or in your case dave, just: cp brainmask.mgz brainmask.auto.mgz since you manually edited brainmask.mgz On Thu, 2006-06-29 at 14:18 -0400, Doug Greve wrote: I'm not sure what will happen. Safest to just recreate it: cd subject/mri mri_watershed T1.mgz brainmask.auto.mgz [EMAIL

Re: [Freesurfer] mri_watershed

Oh, don't do that! recon-all will compare the auto with the non-auto. If they are the same then it will re-compute the auto and simply copy to the non-auto, and your changes will be lost. If they are different, then it will recompute the auto but will not propagate it to the non-auto. Make

Re: [Freesurfer] surface area

Thanks. Can I make mris_anatomical_stats use the pial surface instead? Doug Greve [EMAIL PROTECTED] 6/29/2006 1:29 pm White. doug Sasha Wolosin wrote: Dear all, Are the regional surface areas computed by mris_anatomical_stats using the ?h.white surface or the ?h.pial surface? Thanks,

Re: [Freesurfer] Spherical morphometry

Hi Chacko, after tksurfer is loaded, from the gui do file-curvature-load curvature-rh.curv (or rh.sulc) cheers, Bruce On Thu, 29 Jun 2006, Chacko Cherian wrote: Hello everyone, In spherical morphometry,to create the spherical surfaces,Im using the step 8.1 in the Wiki tutorial. Could

Re: [Freesurfer] Spherical morphometry

there are some people using it for monkey data, not sure about mice. I don't have much experience with the monkey stuff, so you'll need to get that from someone else on the list (hopefully) Bruce On Thu, 29 Jun 2006, Chacko Cherian wrote: The other question that I have is about templates.I

[Freesurfer] printing out from tksurfer and tkmedit

Hello everyone, How can I can I print out the display images from tksurfer and tkmedit other than manually saving them into tiff and then printing them.IS there any way to print them directly? THAnx Chacko. __ Do You Yahoo!? Tired of spam?