Hi all,
I have to implement a Difference element method on a volume extracted
from a mri. Using freesurfer I am able to extract the volume file for
the brain (ie. $h.ribbon), but I need also the volume files for the
skull and for the skin. I have seen that the flag -surf exits in the
watershed
dear freesurfer experts!
I am trying to make a ROI of an area the showed significant difference in
qdec. to do so i am drawing around the area per hand, but it doesnt look very
precies. is there also a function that will float the whole area which is
coloured?
thanks in advance!
rosa
--
We want to extract a spherical ROI of cortical thickness values
centered at the same Talairach coordinate for each brain in a study.
Any suggestions? In the 2007 archives there is an instructive thread
about declaring spherical ROIs on a volume, but I'm not clear about
how we would place
Dear Pedro Paulo:
I need to continue the freesurfer professing from a specific stage of
autorecon2 (careginv; stage 4 of autorecon2 in
http://surfer.nmr.mgh.harvard.edu/fswiki/ReconAllStableTablev4)..
Which is the command line to do it ?...
Sincerely,
Gonzalo Rojas Costa
It would be:
recon-all -s YOUR_SUBJ -make all
---
Pedro Paulo de M. Oliveira Junior
Diretor de Operações
Netfilter SpeedComm Telecom
--- Novo Netfilter 3.0 www.Netfilter.com.br
--- Em breve Netfilter Small Business
2009/7/22 Gonzalo Rojas
Hi,
Is there any way to extend the colortable in freesurfer?
Cheers,
Eylem
Forschungszentrum Juelich
it's just a text file, so sure. If you want it integrated into
tksurfer/tkmedit we'll need to compile it in as well.
cheers,
Bruce
On Wed, 22 Jul 2009, Eylem Kirlangic wrote:
Hi,
Is there any way to extend the colortable in freesurfer?
Cheers,
Eylem
We don't have one.
doug
Flavio Seixas wrote:
Dear All,
In addition to eTIV based on Tailarach transform matrix (see Buckner
et al. paper), is there other estimated total intracranial volume
method, for example, using the BET2 (brain extraction tool)?
Thank you in advance,
Flavio
Hello everyone,
I would like to know if there are left-right orientation issues when
converting images from nifti format to the mgz format. I suspect not as
nifti, unlike analyze, contains the left-right information in the file
itself. But I would like to make sure that there are not issues
No, there are not, just make sure that the nifti itself is accurate.
Garbage in, garbage out.
doug
Narly A Golestani wrote:
Hello everyone,
I would like to know if there are left-right orientation issues when
converting images from nifti format to the mgz format. I suspect not as
nifti,
hi all,
I ran recon-all on a case, and it exited with errors, and the error message
looks like this:
ERROR: Talairach QA check failed!
z-score = -6 = -6 = threshold
Manual Talairach alignment may be necessary, or
include the -notal-check flag to skip this test,
making sure the -notal-check
Dear freesurfers,
I have a few additional questions regarding qdec.
1. Is it possible to specify in qdec so that the results of the analyses
run are saved in a separate destination than the SUBJECTS_DIR?
2. I have read in the qdec tutorial that it is possible to select up to
4 variables to
12 matches
Mail list logo