Hi Jennifer,
if you put this on our drop site we'll take a look.
cheers
Bruce
On Mon, 29 Nov 2010, Jennifer Addicks wrote:
Hello,
I have completed cortical reconstructions for 79 of 80 scans without
error. However, the recon for one participant exited during topology
correction with the
Yes, that looks fine. The only other thing to decide is whether to use
DODS (different offset different slope) or DOSS (different offset same
slope). The default is DODS, but if you don't think that there is an
age-by-group interaction, then you can get more power using DOSS. If you
use DODS,
Luis and Sebastian, you are right that -toff is not accepted anymore.
The way that the motion correction (and func-anat reg) work now is that
a functional template is created, and this template is used as the
reference for MC and reg. This prevents the user from using a different
template for
Hi Doug,
On Nov 29, 2010, at 7:51 , Douglas N Greve wrote:
Luis and Sebastian, you are right that -toff is not accepted anymore. The way
that the motion correction (and func-anat reg) work now is that a functional
template is created, and this template is used as the reference for MC and
Hello FreeSurfers,
By reading through the wiki, it seems like the skullstrip command uses
nu.mgz and T1.mgz,
but is there a way to just run the skullstrip command without nuintensitycor
or normalization?
I have MRIs of a few subjects in which the intensity normalization seems to
not have
Dear expert， We compute the MRI data with FREESURFER using
instruction recon-all -s -all,but some data will show recon -all exited
with ERRORS in the recon-all-status.log. The flowing display error information
:status file for recon-allThu Nov 11 19:22:13 HKT 2010recon-all finished
Hi all,
Mac OS 10.6.5
freesurfer-Darwin-leopard-i686-stable-pub-v5.0.0
I want to run func2roi-sess with a functionally defined label (lh_MT.label).
I have a label stored as : subjects/VM20/label/lh_MT.label
and I can see this label with tksurfer-sess.
When I ran:
func2roi-sess -roidef lh_MT
