[Freesurfer] how to edit the pial surface

Hi FreeSurfer Experts, I had 2 question about the output troubleshooting. 1) when I used the mri_convert command, the format of the input image I choosed was 4D nii format, but not the original dicom format, which would affect the result of reconstruction? 2) When I checked the

Re: [Freesurfer] how to edit the pial surface

Hi Meng 1. Not positive I understand, but I don't think it should matter. 2. we'll need to see some data to diagnose this. cheers Bruce On Sat, 19 May 2012, ?? wrote: Hi FreeSurfer Experts, I had 2 question about the output troubleshooting.   1) when I used the mri_convert

Re: [Freesurfer] 回复: Re: how to edit the pial surface

p.s. looks like an intensity normalization failure. Can you give us details of the acquisition? Sequence name, voxel resolution, etc? If you upload the subject I'll take a look cheers Bruce On Sat, 19 May 2012, limengsecret wrote: Hi Professor, The image blow shows the problems which

Re: [Freesurfer] ERROR: comparison in expression (FS with SGE)

Rather one unsets it like this: unset POSIXLY_CORRECT Peace, Matt. -Original Message- From: Matt Glasser [mailto:m...@ma-tea.com] Sent: Friday, May 18, 2012 12:47 PM To: 'freesurfer@nmr.mgh.harvard.edu' Subject: RE: [Freesurfer] ERROR: comparison in expression (FS with SGE) Another

[Freesurfer] how to map the anatomical to the diffusion space

Hi FreeSurfer Experts, Using the mri_surfcluster command, I got the labels of the significant regions from qdec comparisons of thickness between two groups. The diffusion data was not processed using the dt_recon, but DTI-studio. So how can I map the significant regions to the individual

[Freesurfer] How to edit the pial surface

Hi professor, The attachment is the subject after running the recon-all command. MR data were obtained on a 1.5T Philips Achieva Nova Dual MR scanner. the sequence name is T1W.3D.FFE.SENSE and the voxel size is 0.90*0.90*1mm. how should I fix the poor quality surface reconstruction? Thanks a