not really, although it would be easy enough to do in matlab
On Tue, 9 Apr
2013, jwa...@nmr.mgh.harvard.edu wrote:
Expanding this question a bit futher...
It looks like the cutting planes are used for cleaving surfaces. Is
there a comparable tool for cleaving a volume into distinct sub-volum
Hi Tommi, nothing comes to mind in terms of buttons to press on
tksurfer. Can you just add .5 to the non-zero voxels in the w-file? Then
you don't have to use the offset.
doug
On 04/09/2013 03:23 PM, r...@nmr.mgh.harvard.edu wrote:
> Hi,
>
> We need to display surface data (.w file). However,
Hi,
We need to display surface data (.w file). However, our algorithm failed
to assign values for some vertices (and were therefore given the value of
exactly zero), and to clearly differentiate those from vertices where we
successfully computed values, we would like the vertices where we could
n
Hi Gerit - Are you setting the trainfile variable in your configuration
file? If so, don't.
a.y
On Tue, 9 Apr 2013, Gerit Pfuhl wrote:
> Dear freesurfer experts,
>
> I was wondering whether we also need to upgrade the tutorial files when we
> upgraded from freesurer 5.1.0
> to 5.2.0 and use
I don't know that there is such a definition of DLPFC.
doug
On 04/09/2013 04:52 AM, Anupa AV wrote:
> Dear All,
>
> I 'd like to know the xmin, ymin and zmin for creating DLPFC label
> using bblabel string.
> I want to make a coronal cut at y=26 for seperating DLPFC from
> premotor cortex.
>
>
Valtina,
It should be viewable in freeview. Try:
freeview -f mysurface.gii
tksurfer can load .gii files as well. also, mris_convert will convert
to/from gifti. see its --help output.
Nick
On Mon, 2013-04-08 at 08:05 -0400, Valtina Pouegue wrote:
> Hi,
>
>
> I saw in the documentation th
Expanding this question a bit futher...
It looks like the cutting planes are used for cleaving surfaces. Is
there a comparable tool for cleaving a volume into distinct sub-volumes
(e.g., medial and lateral)?
Thanks,
Jeff
>
>
>
> - Forwarded Message -
> From: Anupa AV
> To: Bruce
Are you running this on your own subject or the tutorial subject?
Please include the freesurfer list on all emails with tracula questions.
Thanks,
a.y
On Tue, 9 Apr 2013, Gerit Pfuhl wrote:
Dear Anastasia,
I got some improvement by setting nctps to 7 (as I had done last week with
version 5
Hi Stefano - Did you try CVS for the inter-subject registration? It
doesn't look like it from the configuration file.
a.y
On Tue, 9 Apr 2013, std...@virgilio.it wrote:
Hi Anastasia,
yes, I tried.I'm attacking the last configuration file that I used.
Thanks,
Stefano
Messaggio origin
Hi Dylan - Can you send your trac-all.log file? (When the baselist is
included in the dmrirc, otherwise you're just running the cross-sectional
tractography.)
Thanks,
a.y
On Mon, 8 Apr 2013, Dylan Nielson wrote:
I'm running CentOS 6.4. I don't know if it matters, but I tried running the
com
Hi Anastasia,
yes, I tried.I'm attacking the last configuration file that I used.
Thanks,
Stefano
Messaggio originale
Da: ayend...@nmr.mgh.harvard.edu
Data: 9-apr-2013 1.42
A:
Cc:
Ogg: Re: [Freesurfer] incomplete tracts
What registration methods are you using for the intra-subject
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Hi Benjamin
what version of FS are you using? I'm surprised by the little spot of
"none" in the cuneus, not sure what caused that. Does the aseg look okay?
It does look like insula is extending too far medially. What are you
intending to do with these data? These relatively minor problems may n
Dear All,
I 'd like to know the xmin, ymin and zmin for creating DLPFC label using
bblabel string.
I want to make a coronal cut at y=26 for seperating DLPFC from premotor cortex.
I tried by giving a value of xmin=0, ymin=26 and zmin= 0.
I'd like to know whether I'm on right track.
Thanks in adv
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