Hi Matt!
Refering to an older mail from 06 Mar 2013 I would be also interested to
integrate BET-results for the initial registration step. Using the -B
option in BET I get very robust results.
You recommend: ... using the BET extracted image instead of the image with
skull for the initial
Those pipelines will hopefully be available publicly this summer. The
relevant code is this though:
recon-all -i input image -subjid $SubjectID -sd $SubjectDIR -motioncor
-talairach -nuintensitycor -normalization
mri_convert input brain extracted image
$SubjectDIR/$SubjectID/mri/brainmask.mgz
Dear Matt!
Many thanks for your help! I will try it...
All the best,
Luke
Matt Glasser
m...@ma-tea.com
