Dear freesurfer community,
we are conducting cortical-thickness analysis using freesurfer-4.4.0 and have
been experiencing some problems with the final analysis steps.
We are using the qdec. Uploading of the data table has been successful. When we
try to use the “Analyze” command (design) in
hmmm. That would be strange and would result in complete failure (which I
guess is what you have seen). For what it's worth, Matt is right and we
haven't tested the code on many datasets, but at least so far it has been
independent of contrast (that is, it works on both T2 and FLAIR)
cheers
Hi Carina, run
recon-all -s subject -qcache
for each subject and this will create the file
doug
On 9/28/13 5:37 AM, car...@van-vlodrop.de wrote:
Dear freesurfer community,
we are conducting cortical-thickness analysis using freesurfer-4.4.0 and have
been experiencing some problems with
Hi,
Is it possible to run the LGI on data that has already been longitudinally
processed?
For example, when I try to run:
recon-all -s subject001.long.subject001_base -localGI
I get the following error:
ERROR: Are you trying to run or re-run a longitudinal time point?
If so, please
On Sat, Sep 28, 2013 at 5:28 AM, Bruce Fischl fis...@nmr.mgh.harvard.eduwrote:
hmmm. That would be strange and would result in complete failure
I agree, but
$ grep bbregister recon_log_withT2.txt
$ grep fslregister recon_log_withT2.txt
both turn up empty
hmmm, maybe Nick or Doug can investigate, although we are crazy busy at
the moment
On Sat, 28 Sep 2013, Michael Waskom wrote:
On Sat, Sep 28, 2013 at 5:28 AM, Bruce Fischl fis...@nmr.mgh.harvard.edu
wrote:
hmmm. That would be strange and would result in complete failure
I agree,
