Re: [Freesurfer] QDEC question

2015-07-26 Thread Dr Sampada Sinha
Hello Dr Greve, Many thanks for replying to me. We are not including eTIV as a covariate. Since we did not find any correlation with the thickness. Kind regards, Sampada ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu

[Freesurfer] Regarding: 3 groups and 1 covariate contrast

2015-07-26 Thread Dr Sampada Sinha
Dear freesurfer experts, I am trying to find group difference (thickness) among 3 groups (SCA1, SCA2, SCA3) taking in account one covariate (CAG levels). Will you please let me know if I need to use DODS or DOSS, though I am more interested in using DODS. I read the FSGD examples page (

Re: [Freesurfer] bad registration using mri_vol2vol

2015-07-26 Thread Barbour, Tracy,M.D.
I made the label in tkmedit, then i used label2v Sent from my iPhone On Jul 24, 2015, at 12:22 PM, Douglas Greve gr...@nmr.mgh.harvard.edu wrote: Sorry, I've lost track of what is going on here. How was lh.amyg.faceaw_func.anatconstr.p05.5.3CRFH.n70.mgz created? On 7/23/15 12:08

Re: [Freesurfer] hello freesurfer developer~

2015-07-26 Thread A-reum Min
Hi, Bruce When i use a Qdec, this message(12.png) show up.. How can i solve this problem? 2015-07-23 22:57 GMT+09:00 Bruce Fischl fis...@nmr.mgh.harvard.edu: 1. No, each subject has a different #. You can map to fsaverage (this is what -qcache does if you specify it for recon-all), then they

Re: [Freesurfer] hello freesurfer developer~

2015-07-26 Thread dgw
Hi A-reum, I think you may be able to get a faster response if you include some details about your setup: I would start with the following: http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting and run bugr. hth D On 7/26/15 5:17 PM, A-reum Min wrote: Hi, Bruce When i use a Qdec, this

Re: [Freesurfer] hello freesurfer developer~

2015-07-26 Thread Bruce Fischl
Maybe Zeke or Ruopeng know? On Jul 26, 2015, at 5:17 PM, A-reum Min naniy...@gmail.com wrote: Hi, Bruce When i use a Qdec, this message(12.png) show up.. How can i solve this problem? 2015-07-23 22:57 GMT+09:00 Bruce Fischl fis...@nmr.mgh.harvard.edu: 1. No, each subject has a

Re: [Freesurfer] hello freesurfer developer~

2015-07-26 Thread A-reum Min
Hello bruce I solve this problem(12.png) Thank you 2015-07-27 13:03 GMT+09:00 dgw dgwake...@gmail.com: Hi A-reum, I think you may be able to get a faster response if you include some details about your setup: I would start with the following: