[Freesurfer] Freeview crash if started with argument from Matlab 2015a on Mac os 11.10.5

2015-08-16 Thread Knut J Bjuland
Dear FreeSurfer experts I have downloaded the FreeSurfer tutorials. When I try to load Freeview in Matlab with the argument that I found in the group tutorial Freeview will crash on Mac OS X 10.10.5, but it worked on Fedora 22. I am using Matlab because Freeview do not have FDR. Fdr

[Freesurfer] Basic error

2015-08-16 Thread Hugh Pemberton
Hi freesurfer team, I think this is a very basic error with the mri_convert command but I can't seem to make it work, I'm getting this: mri_convert $PWD 001.nii mri_convert /Applications/freesurfer/subjects/DEM009/dicom/20140731/1835 001.nii $Id: mri_convert.c,v 1.179.2.7 2012/09/05

Re: [Freesurfer] Basic error

2015-08-16 Thread Bruce Fischl
What is the source file you are trying to convert? You need to specify a file not a directory. If it is dicom, give it one file in the right series Cheers Bruce On Aug 16, 2015, at 2:34 PM, Hugh Pemberton hughpembert...@gmail.com wrote: Hi freesurfer team, I think this is a very basic

[Freesurfer] Hyppocampal subfields v 6.0 on segmentations with prior versions

2015-08-16 Thread Nicola Toschi
Hi List, quick question - can I run the new HyppoSubfields module (v.6.0) on the subject dirs produced by FS 5.3 and/or FS5.1? Or do I need to re-recon-all all using FS 6.0 beforehand? Thanks in advance, Nicola ___ Freesurfer mailing list

Re: [Freesurfer] Basic error

2015-08-16 Thread Matt Glasser
You cannot have spaces in the file name unless you enclose it with quotes. Peace, Matt. From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Hugh Pemberton hughpembert...@gmail.com Reply-To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Date: Sunday, August 16, 2015 at 1:34 PM