Re: [Freesurfer] Freeview error

2017-05-27 Thread Schumman Resonance
Attached is the full command line; as per a screen output Freeview quits. I have not tested all surface files, but Freeview uploads fine pial, white, inflated, orig, and sphere. Thanks! On Sat, May 27, 2017 at 8:46 PM, Bruce Fischl wrote: > Can you send us the full

Re: [Freesurfer] Freeview error

2017-05-27 Thread Bruce Fischl
Can you send us the full command line and screen output? Cheers Bruce > On May 27, 2017, at 11:45 PM, Schumman Resonance wrote: > > Hi, > > Newbie question. > > When I try to upload a surface to Freview I get the following error: > > > [0]PETSC ERROR: >

[Freesurfer] Freeview error

2017-05-27 Thread Schumman Resonance
Hi, Newbie question. When I try to upload a surface to Freview I get the following error: [0]PETSC ERROR: [0]PETSC ERROR: User provided function() line 0 in unknown directory unknown file [unset]: aborting job:

Re: [Freesurfer] parcellated hemisphere into matlab

2017-05-27 Thread Bruce Fischl
Hi Fatima have you run the data through recon-all? Bruce n Thu, 25 May 2017, Almarshad F. wrote: Dear Freesurfer expert;   I’m new to Freesurfer and confused about the workflow ..   I am trying to create cortical surface mesh consisted of percolated areas, and have done manual

Re: [Freesurfer] mri_annotation2label No such file or directory

2017-05-27 Thread Bruce Fischl
Hi Duy it is Unix permissions you need to check. It looks like the subject's label dir doesn't exist or couldn't be created. cheers Bruce On Sat, 27 May 2017, Duy Nguyen wrote: Dear Doug  Thank you for your quick response. I got the data from oasis website. How can I get the permission to

[Freesurfer] Three Groups, Two Covariate (Age, Gender)

2017-05-27 Thread stdp82
Hi list,I have difficulty to build a fsgd for Three Groups - 1 Factor, Two Covariate (Age, Gender).Please could you provide an example?ThanksStefano___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu