[Freesurfer] Fw: sim-sign abs/ cluster summary results confirmation

Re: [Freesurfer] Brain.finalsurfs.mgz output

I see, Thank you for your reply. Cheers On Sun, Sep 24, 2017 at 6:52 PM Bruce Fischl wrote: > it is the input to the white/pial surface deformation. Usually it is > identical to the brain.mgz, unless you edit things like pial vessels (I > think: Allison can correct me

Re: [Freesurfer] Hemisphere white surface

Well i could see the steps 6 to 23 are run by autorecon2 on the site ( aren't the hemisphere white surfaces in "final surfs" which is step 21? ) On Sun, Sep 24, 2017 at 6:51 PM Bruce Fischl wrote: > Why haven't you run autorecon3? > On Sun, 24 Sep 2017, Fereshte

Re: [Freesurfer] Brain.finalsurfs.mgz output

it is the input to the white/pial surface deformation. Usually it is identical to the brain.mgz, unless you edit things like pial vessels (I think: Allison can correct me if I'm wrong as this has changed from time-to-time) cheers Bruce On Sun, 24 Sep 2017, Fereshte wrote: Dear Experts,What

Re: [Freesurfer] freesurfer output

Hi Hessam yes, check the stats subdir for each subject (e.g. stats/aseg.stats) cheers Bruuce On Sun, 24 Sep 2017, Z Hessam wrote: > > Hello FreeSurfer Developers, > > I can't access numerical value of each volume after segmentation of MRI > images. > > how can i access that? does

Re: [Freesurfer] Hemisphere white surface

Why haven't you run autorecon3? On Sun, 24 Sep 2017, Fereshte wrote: Dear Experts,I have run the autorecon2 without errors but i can't see rh.white and rh.white outputs ( lh.white.K and lh.white.H instead). Could you please help?  Thank you ___

[Freesurfer] Brain.finalsurfs.mgz output

Dear Experts, What is "brain.finalsurfs.mgz" file? I mean it is the output of which stage in recon-all pipeline? I couldn't find any information about this output on the site. Thank you. Cheers ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu

[Freesurfer] freesurfer output

Hello FreeSurfer Developers, I can't access numerical value of each volume after segmentation of MRI images. how can i access that? does "freesurfer" produce such value for each segment? Best, Hessam ___ Freesurfer mailing list

[Freesurfer] Hemisphere white surface

Dear Experts, I have run the autorecon2 without errors but i can't see rh.white and rh.white outputs ( lh.white.K and lh.white.H instead). Could you please help? Thank you ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu