[Freesurfer] Freesurfer surface to Fieldtrip SPM

Hi I've been struggling to convert a freesurfer surface into an MNI space coordinate. I tried to follow some tutorials and to play around with transformation matrices but nothing works. I have an MNI surface from freesurfer (the cvs_avg35_inMNI152) and I need to align it to the 3d MNI 152. When

[Freesurfer] Question about an error during recon-all process

Dear experts, I am sorry for asking again. I have some problems in running recon-all. Recon-all process was shut down with this error message ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm ***FAILED*** (p=0., pval=0. < threshold=0.0050) Manual Talairach alignment

[Freesurfer] Question about an error during recon-all process

Dear experts, I am sorry for asking again. I have some problems in running recon-all. Recon-all process was shut down with this error message ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm ***FAILED*** (p=0., pval=0. < threshold=0.0050) Manual Talairach alignment

Re: [Freesurfer] bbregister error -- Human Connectome Project Data

There is a structural extended package that has the FreeSurfer folders. Peace, Matt. From: on behalf of Lana Ruck Reply-To: Freesurfer support list Date: Thursday, December 28, 2017 at 12:56 PM To:

Re: [Freesurfer] bbregister error -- Human Connectome Project Data

Okay so if I am going to try and run this option, recon-all must also be done on the structural scans. I have the pre-processed structurals, and I understand from y'all's 2013 paper that they have already been through all of the steps

Re: [Freesurfer] FreeSurfer recon-all issue

Dear Shadia, There are 2 spots in recon-all where symbolic link is created. The first you can overcome by: find following line in your recon-all: set cmd2 = (ln -s $hemi.white.preaparc.$suffix $hemi.white.$suffix) and replace it by set cmd2 = (cp $hemi.white.preaparc.$suffix

[Freesurfer] Error using chol - FS-FAST selxavg3-sess

Running the "selxavg3-sess -s" command line in FS-FAST for seed-based functional connectivity analysis the following errors occurred: -- Temporally filtering Error using chol Matrix must be positive definite. Error in fast_selxavg3b (line 947) Wseg =