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Freesurfer devs,
I presented an automated control point adding tool at HBM and a few freesurfer
lab people came over and had a look. I was wondering if someone would like to
review it for either inclusion or to perhaps reference from the wiki as a
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Hi.
I'm a newbie to Freeview, hoping that this is a simple problem. When I open it
(specifying the lh.pial surface), I get this view:
[cid:image001.jpg@01D40F16.EC48FB10]
Anyone have an idea what's going on here, is it an issue with the screen
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Hello FreeSurfer Users,
I want to run an ROI-based analysis on mri_glmfit as opposed to vertex-based. I
know that if I run mri_glmfit with the --table flag and give it the output of
asegstats2table or aparcstats2table, it will run the analysis on
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Hi!I have a macbook pro MY 2014 with a Intel Core i7(quad core,2.7 ghz) and
16 gb of ram with El Capitan.This Macbook to run recon-all it takes 47
hours with -openmp 8 flag.
A Dell with Intel Core i7 3632Q,8 GB RAM DDR3 1600mhz with Linux takes 8
Hi Megha
looking at the scan you sent I can tell gray from white over most of the
occipital lobe, so I think control points could recover reasonable
surfaces. I would try leaving a "trail" of them going from the
inferior-most, very dark places heading up.
cheers
Bruce
On Thu, 28 Jun 2018,
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Hi, I'm just resending this email in case you missed it.
Thanks!
Megha
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Chawla, Megha
Sent: Wednesday, June 20, 2018 11:11 AM
To:
Hi Doug
Thanks for your reply.
I have not unpacked the error ones!
I will go for it and let you know if there was a problem.
Zahra (Mona) Nasiriavanaki
Postdoctoral Research Fellow
Martinos Center for Biomedical Imaging
Massachusetts General Hospital
149 13th Street, 149-2615
Are the output volumes being created? Do they look ok? Sometimes
unpacksdcmdir will print out an error when there is not actually an
error there (eg, if it does not see the expected number of files, but
some times its expectation is wrong). In dcmunpack (the replacement for
unpacksdcmdir), I
Hi Freesufer developers
We are getting some errors in our resting state and ASL scans. Everything goes
fine while we are scaning the subjects, but when we look at the data in BORGET,
some of them come out with errors.
I copied one of the scaninfo files, so you can see the errors.
Is there
I don't think it is possible to do as a mixed effect. You can do this
with the standard GLM by using a per vertex regressor (--pvr
thickness.mgh to mri_glmfit)
On 06/27/2018 12:12 PM, Mark Wagshul wrote:
>
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>
> Dear Freesurfer experts,
>
> We are
Can you replicate the error outside of dt_recon? If so, then you should
make a posting to the FSL group.
On 06/28/2018 02:03 AM, Куликова Софья Петровна wrote:
>
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>
> Hello FreeSurfer Developers,
>
> I was trying to run dt_recon (on centos7 system) but have
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Hello FreeSurfer Developers,
I was trying to run dt_recon (on centos7 system) but have got an error at the
eddy_correct stage, saying there is no $FSLDIR/bin/imglob file.
Indeed, it is not there. However, I gave installed FSL according to their
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