[Freesurfer] Freeview heat map

2018-08-16 Thread James Brown
External Email - Use Caution Dear Freesurfer developers, I analyzed some data in Freesurfer. At the end, I used "mri_segstats" to measure a parameter of interest for every ROI in DKT atlas. I would like to load the mean values of this parameter to Freeview (every ROI in DKT has

Re: [Freesurfer] DOWNLOAD LINK

2018-08-16 Thread Hoopes, Andrew
Hi, what link are you using? Are you trying to download stable6 or the development release? best, Andrew From: on behalf of FabLab HGUGM Reply-To: FS Help Date: Thursday, August 16, 2018 at 5:11 AM To: FS Help Subject: [Freesurfer] DOWNLOAD LINK External Email - Use Caution Hello,

Re: [Freesurfer] mri_label2label no registration difference

2018-08-16 Thread Yagmur Ozdemir 19
External Email - Use Caution mri_label2vol --srcubject fsaverage --srclabel fsaverage/label/lh.x.label --trgsubject >subject> --trglabel /label/lh.x.label --regmethod surface --hemi lh for surface registration mri_label2vol --srcubject fsaverage --srclabel

[Freesurfer] DOWNLOAD LINK

2018-08-16 Thread FabLab HGUGM
External Email - Use Caution Hello, At the FabLab in Hospital Gregorio MaraƱon in Madrid we have tried to download Free Surfer several times but the download link for mac seems to no longer be working. Is there any other link available? Thanks!

[Freesurfer] PSIR to refine pial surface?

2018-08-16 Thread Vriend, Chris
External Email - Use Caution Dear Freesurfers, In our centre we acquire T1 MPRAGE scans and phase-sensitive inversion recovery (PSIR) scans. Because of its better contrast between brain and non-brain I thought that we could use this scan in the freesurfer pipeline (v6.0) to