Can you please also send your bvecs and bvals files? I can't see anything else
going wrong, so I'm guessing it has to do with those.
From: Hua, Jessica
Sent: Monday, April 13, 2020 12:10 PM
To: Yendiki, Anastasia ;
freesurfer@nmr.mgh.harvard.edu
Subject: Re:
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Hello all!
Inaugural message to the list; I will attempt to be brief with the project
description.
The setup is consistent between both versions 6.0.0 and 7.0.0-beta, run on a
high performance cluster, accessed through macOS terminal + Xquartz,
they aren't released yet, but we are working on them
On Tue, 14 Apr 2020,
Koustav Chatterjee wrote:
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Dear Sir,I am afraid I am yet to find pedunculopontine nucleus and locus
coeruleus in particular through FS dev versions of labelings volume.
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*Thank you Sir for your reply.*
On Tue, Apr 14, 2020 at 12:20 AM Douglas N. Greve
wrote:
> We do not label those (yet!)
>
> On 4/13/2020 2:42 PM, Koustav Chatterjee wrote:
>
> External Email - Use Caution
> Dear Sir,
> I am afraid I am yet
We do not label those (yet!)
On 4/13/2020 2:42 PM, Koustav Chatterjee wrote:
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Dear Sir,
I am afraid I am yet to find *pedunculopontine nucleus *and *locus
coeruleus *in particular through FS dev versions of labelings volume.
Could you please help me out?
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Dear Sir,
I am afraid I am yet to find *pedunculopontine nucleus *and *locus
coeruleus *in particular through FS dev versions of labelings volume.
Could you please help me out?
Best Regards,
KC
On Sun, Apr 12, 2020 at 10:46 PM Bruce Fischl
wrote:
>
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Hi Dr. Yendiki,
I wasn't sure if I could attach files to the FreeSurfer, so I have also emailed
your work email. Attached is my full configuration file as well as my error
log.
Best,
Jessica
---
Jessica Hua, M.A.
Cognitive and Emotional Control
Dear Freesurfer Experts,
We would like to confirm the best T1 and T2 sequences at Martinos for
Freesurfer 6 reconstruction.
There is a document on the FS Wiki
(https://surfer.nmr.mgh.harvard.edu/fswiki/FreeSurferWiki?action=AttachFile=get=FreeSurfer_Suggested_Morphometry_Protocols.pdf)
and we
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Thank you so much sir
On Mon, 13 Apr 2020, 19:56 Bruce Fischl, wrote:
> yes, that should be doable if you process in the order I suggested below
> cheers
> Bruce
> On
> Mon, 13 Apr 2020, Amar Shukla wrote:
>
> >
> > External Email - Use
yes, that should be doable if you process in the order I suggested below
cheers
Bruce
On
Mon, 13 Apr 2020, Amar Shukla wrote:
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Dear Sir,
Thank you for your precious reply
Actually i am working on to the study of Disease which have the effect
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Dear Sir,
Thank you for your precious reply
Actually i am working on to the study of Disease which have the effect on
the brain.
1) First i am using t1 image for analysis of the same subject of that
disease.
2) I am using Diffussion image for the
Hi Amar
I'm not quite sure I understand your question, but in FS you would use
the T1 as input to recon-all, then the outputs of that and the diffusion
data would let you run tracula
cheers
Bruce
On Mon, 13 Apr 2020, Amar Shukla wrote:
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Hello
Hi Javier
our atlas includes a broad range of ages and is intended to work across
the lifespan except for <=5 or so
cheers
Bruce
On Mon, 13 Apr 2020, javier quilis wrote:
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Dear Freesurfer developers,
I'm interested in trying different possible
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Hello Freesurfer,
Can we go through the volumetric [surface area and many more ] through DTI
images and T1 or t2 weighted images of the same subject. Can we provide
common study and can we develop any analysis on these studies.
My research is
Hi Jessica - Please send us your trac-all.log file as an attachment. It's hard
to guess what went wrong just from the output of one command, without seeing
the output of all commands before it. Thanks!
a.y
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf
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Dear Freesurfer developers,
I'm interested in trying different possible atlas to do the subcortical
segmentation in order to see which one is more accurate in my dataset. Is there
a list of atlas somewhere and the explanation of how to use them? The
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Thank you so much, Sir
On Mon, Apr 13, 2020 at 1:45 AM Bruce Fischl
wrote:
> yes, if you run your T1 through FreeSurfer's recon-all you should be able
> to use tracula afterwards to reconstruct tract models from your dwi data.
>
> We use T1 because
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