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Thank you very much!
On Wed., Feb. 10, 2021, 10:05 a.m. Douglas N. Greve,
wrote:
> Use mris_anatomical_stats to create an LUT with the -c option. You can
> look in recon-all.cmd for an example. You only need to do one hemi as they
> both will be the
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The white spots occur on 4 of 32 participants but only on two it's so
severe that it impacts the pials.
Am Fr., 12. Feb. 2021 um 17:01 Uhr schrieb Douglas N. Greve <
dgr...@mgh.harvard.edu>:
> Usually you get hypointensities in T1w in older patients.
Usually you get hypointensities in T1w in older patients. Maybe it is
some kind of scarring. Does this happen a lot or just this one subject?
On 2/12/2021 10:17 AM, Nils B. wrote:
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Hello and thank you for your answer. That would mean I'd need to
manually
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Hello and thank you for your answer. That would mean I'd need to manually
manipulate the numbers from the files?
The data is from a 1.5T scanner and the participants are old, so right now
my Theory is that it's a mix of the bad quality and age-related
What surfaces are there?
On 2/11/2021 4:35 PM, Koch, Erin M. wrote:
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Hi Douglas,
I am sorry I have to bug you once more. While the inflation step
completed with the suggested flag, as did the flattening step (for
creating a flat map), when I went to
So there is an interpolation which will certainly change the cortical
results to some degree.
On 2/11/2021 2:15 PM, Funk, Quentin wrote:
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I used the SPM default coregistration settings -- which it calls "4th
degree B-spline".
From: "Douglas N.
The only thing that you can really do is to edit to change the
intensities in the brain.finalsurfs.mgz, but that is going to be hard.
What causes the bright spots?
On 2/11/2021 1:53 PM, Nils B. wrote:
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Hello everyone,
I'm having problems with one of my
yes, the pial and white surfaces have the same number of vertices and
they have the same identities
On 2/11/2021 1:25 PM, Krieger, Donald N. wrote:
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It looks like your first answer, i.e. use of mri_annotation2label to
extract pial labels almost gets me
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Dear all,
If in the meantime any of you has had any experience with FS on Ubuntu 20.4,
please let us know the details.
Thank you and kind regards,
Olga Kepinska
From: on behalf of Olga Kepinska
Reply-To: Freesurfer support list
Date:
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Hi Andrew,
thank you for your help, I have attached the mri_nu_correct log from the
base freesurfer directory, let me know if this helps
Michele
On Thu, 11 Feb 2021 at 17:16, Hoopes, Andrew
wrote:
> If you send the mri_nu_correct.mni.log we can
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Hi Victor,
this file is apparently included in the NeuroStats/lme repository on GitHub (in
the ‚geodesic‘ folder’), so getting the toolbox from there might be worth a try.
Not sure why it is not included with Freesurfer.
Best,
Kersten
Am
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