Re: [Freesurfer] Mac install of Freesurfer 7.2.0 - Freeview quitsunexpectedly

2021-07-28 Thread fsbuild
External Email - Use Caution If you have not already done so, see if you get a different result by double clicking on the Freeview.app icon under /Applications/freesurfer/7.2.0 with the mouse. You can try this variation on what's been previously suggested. 1) run a bash shell

Re: [Freesurfer] Mac install of Freesurfer 7.2.0 - Freeview quitsunexpectedly

2021-07-28 Thread fsbuild
External Email - Use Caution Please check in“energy saver” preferences that “automatic graphics switching” is not selected so that high performance graphics is always used. - R. On Jul 28, 2021, at 14:36, Sahil Bajaj sahil.br...@gmail.com wrote:External Email - Use CautionHi

Re: [Freesurfer] Error in hippocampal subfields longitudinal processing

2021-07-28 Thread Kaija Sander
External Email - Use Caution Hi Andrew and Eugenio, Sorry for taking so long to follow up on this again, but after checking MCR_CACHE_ROOT path, it seems that it has already been changed. It is currently set to MCR_CACHE_ROOT=$( echo "/tmp/MCR_${RANDOMNUMBER}/" | tr -d ' ' )

[Freesurfer] Samseg.stats file to table

2021-07-28 Thread AJ
External Email - Use Caution Hi, I was wondering if there is a simple command for generating a table from all the SamsegOutput/stats files across all subjects. When I use the asegstats2table, I get index error: list index out of range. I guess this has to do with the structure

Re: [Freesurfer] Hippocampal Subfield Definition Errors

2021-07-28 Thread Fischl, Bruce
Hi Franchesca It’s hard to say without seeing your data so we can diagnose what went wrong. If you upload a representative dataset we will take a look Cheers Bruce From: Franchesca Kuhney Sent: Wednesday, July 28, 2021 7:46 AM To: Freesurfer support list Cc: Fischl, Bruce Subject: Re:

Re: [Freesurfer] Hippocampal Subfield Definition Errors

2021-07-28 Thread Franchesca Kuhney
External Email - Use Caution Hi Juan and Bruce, I wanted to follow up on my previous email. Do you have any recommendations to manually or automatically fix poor segmentations? Thank you, Franchesca *Franchesca Kuhney, M.A.* *(she/her)* Clinical Psychology Doctoral Student