[Freesurfer] Setting Location?

External Email - Use Caution Hello, I am attempting to convert an image file and am getting the following error: developer@developer-VirtualBox:~$ mri_convert Combined_roi_meanRD.nii Combined_roi_meanRD.img mri_convert Combined_roi_meanRD.nii Combined_roi_meanRD.img reading

Re: [Freesurfer] mri_label2vol fill-ribbon segmentation fault

External Email - Use Caution Hi Yujing, Thank you. I will give it a try! Can documentation be updated? Ben

Re: [Freesurfer] mri_label2vol fill-ribbon segmentation fault

Hi Ben, Just wanted to update you on mris_label2annot command line options. If ‘--no-unknown’ is used with mris_label2annot, ‘—offset 1’ should also be specified. Yujing From: Huang, Yujing Sent: Thursday, June 16, 2022 1:59 PM To: Freesurfer support list Subject: RE: [Freesurfer]

[Freesurfer] TRACULA Configuration Question

External Email - Use Caution Hi FreeSurfer experts, I am planning to use TRACULA and have a question regarding the configuration file and whether we can start with already processed data. We have already run some steps involved in the TRACULA configuration script, which take

[Freesurfer] VirtualBox appliance 7z pass code

External Email - Use Caution Good afternoon! I would like the pass code to unzip the FreeSurfer 7 VirtualBox VM. Thank you, Ryan Johnson ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu

Re: [Freesurfer] about the error on running TRACULA using tutorial data

The tutorial data are obsolete, from old versions of TRACULA (FreeSurfer versions 7.1 or older). From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Xin Qi Sent: Friday, June 17, 2022 5:46 AM To: Freesurfer support list Subject: Re: [Freesurfer] about

Re: [Freesurfer] about the error on running TRACULA using tutorial data

External Email - Use Caution Hi Anastasia: I followed the tutorial notes and don't feel anything wrong with the dmriri.tutorial file, but still encounter the same error while running the preprocessing step. Can you please check the reason? Thank you very much. Best regards Xin

Re: [Freesurfer] about the error on running TRACULA using tutorial data

Hi Xin - Please see the note in the blue box at the top of the tutorial pages. https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Tracula Anastasia. From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Xin Qi Sent: Tuesday, June 14, 2022 11:54 AM To: