[Freesurfer] lesions

specifically) so that it can be viewed in 3D on the original structural brain as a mask? Help would be much appreciated. Many thanks, Joan Fisher University of Chicago ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu

[Freesurfer] 1) annot files on T1 and 2) seed points

Hi all -- I'm still having difficulty with 2 problems that I think are solvable, but I can't figure them out. 1) When I call up aparc+aseg on the T1 image, I get the cortex that has been parcellated, but I do not get the parcellation -- that information is in the .annot files that seem to be

[Freesurfer] mri_convert failure

Hi all -- I have edited an anatomical volume (using AFNI's 3dcalc and 3dLRflip commands), and the final volume looks good. My reading is that mri_convert should not have trouble recognizing an afni BRIK file. However, the error is: unknown file type for file ... (The original Volume+orig.BRIK

[Freesurfer] aseg.stats

It turns out that the segmentation is fine in aseg.mgz (although for some reason I am unable to view the segmentation with FreeSurferColorLUT.txt as it says it wasn't valid or wasn't found even though it is in my directory) and yet the aseg.stats table was not generated. (Doug?) How does one

[Freesurfer] aseg.stats detailed list

be using to get a complete listing of regional size? Many thanks, Joan Fisher U of C ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer