[Freesurfer] Output from mri_cvs_register

Hi! I am running mri_cvs_regsiter, on the cvs_avg35 space. In the dt_recon tutorial ( https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Diffusion ), the expected .m3z output file is called combined_tocvs_avg35_elreg_afteraseg-norm.m3z, but the output I get in the cvs folder is called

[Freesurfer] DTI images, mri_glmfit-sim

Hello! I'm toying with some images acquired by following the dt_recon tutorial (fa-tal). I have prepared them for group analysis and run mri_glmfit, and the results look decent. However, I wanted to correct for multiple comparisons using for example mri_glmfit-sim --sim mc-full 100 2 cdbasename

[Freesurfer] Odd outputs from TRACULA

Hello! I have gone through the TRACULA tutorial, and the tracts are pretty odd. I'm wondering if I did something incorrectly, but as far as I can tell, I followed the tutorial step by step. The individuals in question are healthy, no irregularities in the brains. I have attached images of the

[Freesurfer] glmfit_sim for CVS mapped data

Hi, I've been trying to run glmfit_sim on a glm analysis with data in the AVG_35_CVS space but it doesn't seem to finish (tried almost two weeks). Does anyone have an idea what might be going on here? I used mc_full for 1000 iterations for my simlation.