https://singularity-tutorial.github.io you should at
> least try to install xorg and work from there.
>
> best
> Andrew
>
>
> From: freesurfer-boun...@nmr.mgh.harvard.edu <
> freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Arn
External Email - Use Caution
Dear Freesurfer' experts,
I've created a singularity container from the official docker hub
freesurfer repository (https://hub.docker.com/r/freesurfer/freesurfer)
When running: singularity exec freesurfer.sif freeview I get this error:
freeview_bin:
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*Postdoctoral Fellowship in Spinal Cord and Parkinson's Disease*
We are looking to recruit a post-doctoral fellow in Dr. Julien Doyon’s *Motor
Learning and Plasticity Laboratory*, at McGill University. The suitable
candidate will join a team of post-do
External Email - Use Caution
*Postdoctoral Fellowship in Spinal Cord and Parkinson's Disease*
We are looking to recruit a post-doctoral fellow in Dr. Julien Doyon’s *Motor
Learning and Plasticity Laboratory*, at McGill University. The suitable
candidate will join a team of post-do
Ok. Thank you!
2017-04-11 13:56 GMT-04:00 Douglas N Greve :
> No. qdec is not being developed any more, so don't expect it to change any
> time soon
>
>
> On 04/11/2017 01:14 PM, Arnaud Boré wrote:
>
>> Do you know somebody who can tell us if qdec should be fixed or
Is that normal ?
Le 11 avr. 2017 12:34 PM, "Douglas N Greve" a
écrit :
Yes, the label is shifted off the brain when I run that command
On 04/11/2017 10:13 AM, Arnaud Boré wrote:
> Hi Douglas,
>
> Yes I would like to draw ROIs, I understand I can use tksurfer.
> I woul
abels, then you can also use tksurfer.
>
>
> On 04/10/2017 11:34 AM, Arnaud Boré wrote:
>
>> Hi Douglas,
>> What more can I do to help you figure out what's wrong ?
>> Thank you in advance
>> Arnaud
>>
>> 2017-04-07 16:50 GMT-04:00 Arnaud Boré &g
Hi Douglas,
What more can I do to help you figure out what's wrong ?
Thank you in advance
Arnaud
2017-04-07 16:50 GMT-04:00 Arnaud Boré :
> There is no shift in freeview.
>
> 2017-04-07 16:35 GMT-04:00 Douglas N Greve :
>
>> Not yet. Did you try to load it into freeview?
There is no shift in freeview.
2017-04-07 16:35 GMT-04:00 Douglas N Greve :
> Not yet. Did you try to load it into freeview? If so, do you still see the
> shift?
>
>
> On 04/07/2017 04:14 PM, Arnaud Boré wrote:
>
>> Do you want me to attach/upload a screenshot of the shi
Do you want me to attach/upload a screenshot of the shift ?
2017-04-07 13:10 GMT-04:00 Arnaud Boré :
> I try to view it on O_Nap_04MB.
>
> I've tried these two command lines:
> qdec --table qdec.all_subjs.table.dat --surface O_Nap_04MB/surf/rh.pial
> --label O_Nap_04MB/
label/rh.M1_v4.label
I get the same results.
2017-04-07 12:03 GMT-04:00 Douglas N Greve :
> when you view it in qdec, are you viewing it on fsaverage or on O_Nap_04MB
> ?
>
>
> On 04/07/2017 11:47 AM, Arnaud Boré wrote:
>
>> I used this command line: mri_label2la
;
>
>
> On 04/06/2017 04:52 PM, Arnaud Boré wrote:
> > Dear Freesurfer's experts,
> > I draw a specific region on fsaverage using QDEC, then I mapped this
> > label on each subject using mri_label2label. I looked at these
> > registered labels using freevie
Dear Freesurfer's experts,
I draw a specific region on fsaverage using QDEC, then I mapped this label
on each subject using mri_label2label. I looked at these registered labels
using freeview. Most of them are perfect but for some of them I would like
to correct the segmentation. I would like to mo
/right labels would be used for the
segmentation.
Thank you in advance.
Arnaud Boré
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The information in this e-mail is intended only for
Dear Freesurfer's expert,
I want to create a 3d volume using an annot file and I'm using
mri_label2vol command.
When running this command line:
mri_label2vol --annot sub1/label/lh.Yeo2011_7Networks_N1000.annot
--identity --subject sub1 --hemi lh --o sub1/mri/lh.Yeo.nii.gz --temp
sub1/mri/T1.mgz
you in general cc the list on these questions so that others can
> answer.
>
> What you are trying to do is what the inflated surface is designed for. I
> don't think the transparency thing would work - it would just be confusing
>
>
> cheers
> Bruce
>
>
> On Tue
Dear Freesurfer experts,
Using tksurfer I open an inflated surface and I display the pial surface.
Then I load an overlay but I'm not able to see it correctly. Is it possible
to put a transparency/opacity value for the surface so I can see better my
overlay ?
Thank you for your help
Arnaud Bore
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