Re: [Freesurfer] fmriprep to fsfast interface

2018-05-07 Thread Boggess, Matthew Jozsef
. On 05/04/2018 05:11 PM, Boggess, Matthew Jozsef wrote: > > Hello, > > > I just wanted to follow up on this again. Is there any way to > transform functional data (already in T1 space) to tal space directly? > Something like passing an identity registration matrix to mri_vol2vo

Re: [Freesurfer] fmriprep to fsfast interface

2018-05-04 Thread Boggess, Matthew Jozsef
? If not, I will just try re-registering as you suggested, but I am hoping to minimize the extra processing steps. Thanks, Matt From: freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Boggess, Matthew Jozsef

Re: [Freesurfer] fmriprep to fsfast interface

2018-04-20 Thread Boggess, Matthew Jozsef
/14/18 10:00 AM, Boggess, Matthew Jozsef wrote: Hello, I just wanted to follow up to see if anyone could help with any of my questions, particularly # 1. Thank you! Matt Boggess From: freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.

Re: [Freesurfer] fmriprep to fsfast interface

2018-04-14 Thread Boggess, Matthew Jozsef
Hello, I just wanted to follow up to see if anyone could help with any of my questions, particularly # 1. Thank you! Matt Boggess From: freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Boggess, Matthew

[Freesurfer] fmriprep to fsfast interface

2018-04-05 Thread Boggess, Matthew Jozsef
Hello, I've been working on taking the outputs of the fmriprep BOLD preprocessing tool (https://fmriprep.readthedocs.io/en/latest/index.html) and coercing them into the fsfast structure so that first levels can be run with mkanalysis-sess and selxavg3b-sess. It's been a bit trickier than