[Freesurfer] EasyReg usage

External Email - Use Caution Hi, I checked the archive for any pointers about specific use instructions for EasyReg and read the wiki page. I would like to register three T1w acquisitions on three planes (Axial, Cor, Sagittal). This was my first attempt: *mri_easyreg --ref

[Freesurfer] ?reference(s) supporting DLPFC label

Dear FS community, I'm looking into DLPFC volume/thickness. Following advice posted before on this forum, I'm adding G_frontal_middle.label + S_frontal_inferior.label + S_frontal_middle.label from Destrieux 2009 atlas as a surrogate for DLPFC. My question is whether folks could provide

[Freesurfer] kvl binaries missing from ppc 5.1 stable release

wait that long? doug On 07/31/2012 06:01 PM, Fidel Vila wrote: And there is nothing in /Applications/freesurfer/bin? There are 357 items in /Applications/freesurfer/bin Are there any files in the other directories? Indeed, from /Application/freesurfer/average (50 items in here

Re: [Freesurfer] tcsh: tailarach_avi: Command not found

? doug On 07/31/2012 06:01 PM, Fidel Vila wrote: And there is nothing in /Applications/freesurfer/bin? There are 357 items in /Applications/freesurfer/bin Are there any files in the other directories? Indeed, from /Application/freesurfer/average (50 items in here) to / Applications/freesurfer

Re: [Freesurfer] tcsh: tailarach_avi: Command not found

be back until Mon. Can you wait that long? doug On 07/31/2012 06:01 PM, Fidel Vila wrote: And there is nothing in /Applications/freesurfer/bin? There are 357 items in /Applications/freesurfer/bin Are there any files in the other directories? Indeed, from /Application/freesurfer/average (50

Re: [Freesurfer] tcsh: tailarach_avi: Command not found

PDT 2012 done a3128u:~ FVila$ On 25-Jul-12, at 8:22 PM, Douglas Greve wrote: did you set up your environment so that your path environmentvariable has all the proper paths in it? Look at the wiki forinstructions.dougOn 7/25/12 7:57 PM, Fidel Vila wrote:Hi

Re: [Freesurfer] tcsh: tailarach_avi: Command not found

fail. doug On 07/31/2012 04:05 PM, Fidel Vila wrote: Hi Doug, I re-installed freesurfer, and I still get the same error message (terminal output attached); bin files are still missing from bin folder. Shall I report this as a bug? Regards, Fidel On 25-Jul-12, at 8:22 PM

Re: [Freesurfer] tcsh: tailarach_avi: Command not found

:29 PM, Fidel Vila wrote: Thanks for your prompt reply, Doug. I've been checking and following the wiki instructions with regards to setting up proper paths, and I could not find an obvious (to me) problem there. I attach a file with things I have tried and issues I have found. Further

Re: [Freesurfer] tcsh: tailarach_avi: Command not found

environmentvariable has all the proper paths in it? Look at the wiki forinstructions.dougOn 7/25/12 7:57 PM, Fidel Vila wrote:Hi Freesurfer experts, I recently installed FS (PowerPC architecture version available on FS website) on a Mac OS X 10.4.11

[Freesurfer] tcsh: tailarach_avi: Command not found

Hi Freesurfer experts, I recently installed FS (PowerPC architecture version available on FS website) on a Mac OS X 10.4.11 and I get the attached output error when running recon-all. Advice on how to troubleshoot this would be appreciate. Thanks, Fidel a3128u:/Applications FVila$

[Freesurfer] qdec.table.dat file

Hi Freesurfer experts, A newbie question regarding working with QDEC. When I try to upload the qdec.table.dat file (attached) an error messages pops up Error loading the data table. To the best of my knowledge I've followed the guidelines on the tutorial in terms of formatting. What would

[Freesurfer] bash freesurferstats2table script

Hi there, I was wondering if it would be possible to obtain a copy of the freesurferstats2table script that is posted on the Wiki. When I try to access it it requests a user name and password (I tried my mailing list username and psswd, but didn't work). Greatly appreciate it, Fidel