Re: [Freesurfer] problem using mri_vol2label for subcortical regions

_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ Dr. Lucia Billeci, PhD Institute of Clinical Physiology (IFC) National Research Council (CNR) via Moruzzi 1, 56124, Pisa, Italy e-mail: lucia.bill...@ifc.cnr.it _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ > On 7 May 2018, at 19:32, Douglas N. Gr

Re: [Freesurfer] problem using mri_vol2label for subcortical regions

ge/mri/aseg.mgz --id 8 --l ./tests_label/8.label --surf fsaverage lh white But I have the following error message: ERROR: dim mismatch between surface (163842) and input (16777216) Could you please help me? Thanks a lot in advance Best regards Lucia Billeci _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _

Re: [Freesurfer] problem using mri_vol2label for subcortical regions

External Email - Use Caution Dear Douglas, thanks a lot. This can solve my problem. Could you please give my some explanations about how to open and use the tool? Thanks Regards Lucia _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ Dr. Lucia Billeci, PhD Institute of Clinical

Re: [Freesurfer] problem using mri_vol2label for subcortical regions

_ _ _ Dr. Lucia Billeci, PhD Institute of Clinical Physiology (IFC) National Research Council (CNR) via Moruzzi 1, 56124, Pisa, Italy e-mail: lucia.bill...@ifc.cnr.it _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ > On 2 May 2018, at 17:05, Bruce Fischl <fis...@nmr.mgh.harvard.edu> w

Re: [Freesurfer] problem using mri_vol2label for subcortical regions

mri_surfcluster as I get an empty file. Hope Doug can help me. Thanks Lucia _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ Dr. Lucia Billeci, PhD Institute of Clinical Physiology (IFC) National Research Council (CNR) via Moruzzi 1, 56124, Pisa, Italy e-mail: lucia.bill...@ifc.cnr.it

[Freesurfer] problem using mri_vol2label for subcortical regions

: mri_vol2label --c $SUBJECTS_DIR/fsaverage/mri/aseg.mgz --id 8 --l ./tests_label/8.label --surf fsaverage lh white But I have the following error message: ERROR: dim mismatch between surface (163842) and input (16777216) Could you please help me? Thanks a lot in advance Best regards Lucia Billeci

Re: [Freesurfer] TRACULA statistics

-lateralorbitofrontal ctx-lh-medialorbitofrontal ctx-lh-middletemporal ctx-lh-rostralanteriorcingulate ctx-lh-superiortemporal ctx-lh-temporalpole ctx-lh-insula and for each area I have the volume of the path. Is it correct? Thanks Lucia _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ Dr. Lucia Billeci, PhD

Re: [Freesurfer] TRACULA statistics

32 864.0 ctx-rh-transversetemporal 0. 0. 0. 0. 0. 110 2035 238 6426.0 ctx-rh-insula 0. 0. 0. 0. 0. _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _Dr. Lucia Billeci

Re: [Freesurfer] TRACULA statistics

the cortical parcellation that it connects? Thanks Lucia On Oct 14, 2013, at 11:08 PM, Lucia Billeci wrote: Hi Anastasia, thanks for you answer. Now I have understood the meaning of that parameter. Best regards Lucia On Oct 14, 2013, at 10:58 PM, Anastasia Yendiki wrote: Hi Lucia

Re: [Freesurfer] TRACULA statistics

the cortical parcellation and subcortical segmentation in the individual's diffusion space like this: freeview dmri/dtifit_FA.nii.gz dlabel/diff/aparc+aseg.bbr.nii.gz:colormap=lut:opacity=.5 -tv dpath/merged_avg33_mni_bbr.mgz Hope this helps, a.y On Fri, 18 Oct 2013, Lucia Billeci wrote

[Freesurfer] TRACULA statistics

_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ Dr. Lucia Billeci, PhD Institute of Clinical Physiology (IFC) National Research Council (CNR) via Moruzzi 1, 56124, Pisa ITALY Tel: +39-0506213204 e-mail: lucia.bill...@ifc.cnr.it

Re: [Freesurfer] TRACULA statistics

). It depends on the configuration parameters (nsample, nkeep), so it'll be the same if these configuration parameters are the same. Hope this helps, a.y On Mon, 14 Oct 2013, Lucia Billeci wrote: Dear all, I noticed that in the TRACULA statistics output files (pathstats.overall.txt

Re: [Freesurfer] Error running TRACULA

? Do I need to change memory allocation? Thanks again. Lucia _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ Dr. Lucia Billeci, PhD Institute of Clinical Physiology (IFC) National Research Council (CNR) via Moruzzi 1, 56124, Pisa ITALY Tel: +39-0506213204 e-mail: lucia.bill...@ifc.cnr.it

[Freesurfer] Fwd: Error running TRACULA

and not just to me personally. This way the messages are archived, which reduces the replication of questions. http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/ Thanks! a.y On Wed, 2 Oct 2013, Lucia Billeci wrote: I found this: build-stamp.txt: freesurfer-Darwin-leopard-i686

Re: [Freesurfer] Error running TRACULA

number of entries I removed the blank line as you suggested (see attach) so I don't understand the error Thanks Lucia bvals Description: Binary data bvecs Description: Binary data _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ Dr. Lucia Billeci, PhD Institute of Clinical Physiology (IFC

Re: [Freesurfer] Error running TRACULA

Hi Anastasia here are the files Thanks Lucia bvals Description: Binary data bvecs Description: Binary data _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ Dr. Lucia Billeci, PhD Institute of Clinical Physiology (IFC) National Research Council (CNR) via Moruzzi 1, 56124, Pisa ITALY Tel: +39

[Freesurfer] Error running TRACULA

Dear all, I am trying to apply TRACULA on my DATA (GE data) but when I run the following command: trac-all -prep -c /Users/Desktop/FreesurferData/SUBJECT1/dmrirc_subject1 after eddy current correction, I obtain this error: mv -f /Users/luciabilleci/Desktop/FreesurferData/FRANCINI1/dmri/bvecs

[Freesurfer] question about TRACULA

it to the full image extent for that dimension. Could you please give me some help? Thanks a lot Best Regards Lucia Billeci_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ Dr. Lucia Billeci, PhD Institute of Clinical Physiology (IFC) National Research Council (CNR) via Moruzzi 1, 56124, Pisa ITALY Tel: +39